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ORCID10th BIBE 2010: Philadelphia, Pennsylvania, USA
- 10th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2010, Philadelphia, Pennsylvania, USA, May 31-June 3 2010. IEEE Computer Society 2010, ISBN 978-0-7695-4083-2
Regular Papers
- Lana X. Garmire, Shankar Subramaniam, David G. Garmire, Christopher K. Glass:
A Clustering Approach to Identify Intergenic Non-coding RNA in Mouse Macrophages. 1-6 - Changyong Yu, Guoren Wang, Yuhai Zhao, Keming Mao:
A Multi-stage Spectral Alignment Strategy for Unrestrictive PTM Peptide Identification. 7-13 - Petros Xanthopoulos
, Steffen Rebennack, Chang-Chia Liu, Jicong Zhang, Gregory L. Holmes, Basim M. Uthman, Panos M. Pardalos:
A Novel Wavelet Based Algorithm for Spike and Wave Detection in Absence Epilepsy. 14-19 - Fan Wang, Gagan Agrawal:
A Self-Healing Approach for a Domain-Specific Deep Web Search Tool. 20-25 - Karthik Devarajan, Yan Zhou, Neeraj Chachra, Nader Ebrahimi:
A Supervised Approach for Predicting Patient Survival with Gene Expression Data. 26-31 - Hiromi Arai, Naoya Tochio, Tsuyoshi Kato, Takanori Kigawa, Masayuki Yamamura:
An Accurate Prediction Method for Protein Structural Class from Signal Patterns of NMR Spectra in the Absence of Chemical Shift Assignments. 32-37 - Alexandros Karargyris, Nikolaos G. Bourbakis:
An Elastic Video Interpolation Methodology for Wireless Capsule Endoscopy Videos. 38-43 - Giovanni Stracquadanio, Renato Umeton, Alessio Papini, Pietro Liò, Giuseppe Nicosia:
Analysis and Optimization of C3 Photosynthetic Carbon Metabolism. 44-51 - Sokratis Makrogiannis, Suraj Serai, Kenneth W. Fishbein, Willie Laney, Catherine Schreiber, William B. Ershler, Luigi Ferrucci, Richard G. S. Spencer:
Automated Quantification of Muscle and Fat in the Thigh from Water-, Fat- and Non-suppressed MR Images. 52-57 - Stuart King, Yanni Sun, James R. Cole, Sakti Pramanik:
BLAST Tree: Fast Filtering for Genomic Sequence Classification. 58-65 - Jiawei Zhang, Liping Wang, Xia Liu, Hong-hai Zhu, Jun Dong:
Chinese Cardiovascular Disease Database (CCDD) and Its Management Tool. 66-72 - Jiang Li, Ayyappa Vadlamudi, Shao-Hui Chuang, Xiaoyan Sun, Bo Sun, Frederic D. McKenzie, Lisa H. Cazares, Julius Nyalwidhe, Dean Troyer, O. John Semmes:
Combining Prostate Cancer Region Predictions from MALDI Spectra Processing and Texture Analysis. 73-78 - Edward E. Allen, James L. Norris, David J. John, Stan J. Thomas, William H. Turkett Jr., Jacquelyn S. Fetrow:
Comparison of Co-temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets. 79-85 - Francisco Claude, Antonio Fariña, Miguel A. Martínez-Prieto, Gonzalo Navarro:
Compressed q-Gram Indexing for Highly Repetitive Biological Sequences. 86-91 - Taehyong Kim, Woochang Hwang, Aidong Zhang, Murali Ramanathan:
Computational Framework for Microstructural Bone Dynamics Model and Its Evaluation. 92-98 - Alan L. Kwan, Susan K. Dutcher, Gary D. Stormo:
Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation. 99-105 - Lin Li, James Z. Wang, Dheeraj Chahal, Mark A. Eckert, Carl Lozar:
Detection of Mild Cognitive Impairment Using Image Differences and Clinical Features. 106-111 - Tung T. Nguyen, Panagiota T. Foteinou, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry:
Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human Endotoxemia. 112-117 - Vidya V. Iyer, Ioannis P. Androulakis, Charles M. Roth, Marianthi G. Ierapetritou:
Effects of Triadimefon on the Metabolism of Cultured Hepatocytes. 118-123 - Yang Chen, Jinglu Hu:
eSBH: An Accurate Constructive Heuristic Algorithm for DNA Sequencing by Hybridization. 124-129 - Forrest Sheng Bao, Zhixin Xie, Yuanlin Zhang:
Fast Phased Small RNA Cycle Counting Algorithms. 130-135 - Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahveci:
Finding Dynamic Modules of Biological Regulatory Networks. 136-143 - Lei Shi, Young-Rae Cho, Aidong Zhang:
Functional Flow Simulation Based Analysis of Protein Interaction Network. 144-149 - Omar Gaci:
How to Fold Amino Acid Interaction Networks by Computational Intelligence Methods. 150-155 - Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao:
Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets. 156-161 - Chuang Wu, Andrew S. Walsh, Roni Rosenfeld:
Identification of Viral Protein Genotypic Determinants Using Combinatorial Filtering and Active Learning. 162-167 - Tomoya Higashigaki, Kaname Kojima, Rui Yamaguchi, Masato Inoue, Seiya Imoto, Satoru Miyano:
Identifying Hidden Confounders in Gene Networks by Bayesian Networks. 168-173 - Hamid Ravaee, Ali Masoudi-Nejad, Saeed Omidi, Ali Moeini:
Improved Immune Genetic Algorithm for Clustering Protein-Protein Interaction Network. 174-179 - Marylens Hernandez, Alexander Lachmann, Shan Zhao, Kunhong Xiao, Avi Ma'ayan:
Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network. 180-184 - Haiyun Lu, Shamima Banu Bte Sm Rashid, Hao Li, Wee Kheng Leow, Yih-Cherng Liou:
Knowledge-Guided Docking of Flexible Ligands to SH2 Domain Proteins. 185-190 - Dong-Chul Kim, Jean Gao, Chin-Rang Yang:
Learning Proteomic Network Structure by a New Hill Climbing Algorithm. 191-196 - Jeremy D. Scheff, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry:
Modeling Circadian Rhythms in Inflammation. 197-202 - Ivan Buzurovic, Tarun Kanti Podder, Lei Fu, Yan Yu:
Modular Software Design for Brachytherapy Image-Guided Robotic Systems. 203-208 - Tarun Kanti Podder, Ivan Buzurovic, Yan Yu:
Multichannel Robot for Image-Guided Brachytherapy. 209-213 - W. Garrett Jenkinson, John Goutsias:
On Constructing Thermodynamically Consistent Parametrizations of Kinetic Models. 214-219 - Wei Li, Paul M. Ruegger, James Borneman, Tao Jiang:
Polony Identification Using the EM Algorithm Based on a Gaussian Mixture Model. 220-225 - Natalia V. Petrova, Cathy H. Wu:
Prediction of Catalytic Residues in Proteins Using a Consensus of Prediction (CoP) Approach. 226-231 - Sohei Ito, Naoko Izumi, Shigeki Hagihara, Naoki Yonezaki:
Qualitative Analysis of Gene Regulatory Networks by Satisfiability Checking of Linear Temporal Logic. 232-237 - Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein:
Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies. 238-243 - Gandhi Arpit, Raghavendra Adiga, Kuruvilla Varghese:
Space Efficient Diagonal Linear Space Sequence Alignment. 244-249 - Qian Cong, Bong-Hyun Kim, Lisa N. Kinch, Nick V. Grishin:
Structural Differences between Proteins with Similar Sequences. 250-256 - Steven D. Essinger, Gail L. Rosen:
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy. 257-262 - Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga:
Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations. 263-266 - Lei Shi, Marko Srdanovic, Thijs Beuming, Lucy Skrabanek, Jonathan A. Javitch, Harel Weinstein:
TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature. 267-272 - Ivan Buzurovic, Tarun Kanti Podder, Ke Huang, Yan Yu:
Tumor Motion Prediction and Tracking in Adaptive Radiotherapy. 273-278
Poster Papers
- Alexandros Karargyris, Orestis Karargyris, Nikolaos G. Bourbakis:
3D Representation of the Digestive Tract Surface in Wireless Capsule Endoscopy Videos. 279-280 - Ke Huang, Ivan Buzurovic, Yan Yu, Tarun Kanti Podder:
A Comparative Study of a Novel AE-nLMS Filter and Two Traditional Filters in Predicting Respiration Induced Motion of the Tumor. 281-282 - Changhui Yan, Jingru Luo:
A Comparison between Transmembrane Helices and Reentrant Loops. 283-284 - Kai Guo Yan, Tarun Kanti Podder, Ke Huang, Yan Yu, Lydia Liao:
A Noninvasive Multimodal Sono-contrast NIR Spectroscopy System for Breast Cancer Diagnosis. 285-286 - Hao Zheng, Hongwei Wu:
Analysis on the Correlation Relationships between the Temperature Range Condition and the Genic GC Content Levels of Prokaryotes. 287-288 - Norbert Nwankwo, Huseyin Seker:
Assessment of the Binding Characteristics of Human Immunodeficiency Virus Type 1 Glycoprotein120 and Host Cluster of Differentiation4 Using Digital Signal Processing. 289-290 - Non Yok, Gail Rosen:
Comparison of Gene Prediction Programs for Metagenomic Data. 291-292 - (Withdrawn) Corpus Callosum Shape Deformation Analysis for Multiple Sclerosis. 293
- Marco Masseroli, Giorgio Ghisalberti, Luca Tettamanti:
Detection of Errors and Inconsistencies in Biomolecular Databases through Integrative Approaches and Quality Controls. 294-295 - Hyunsoo Kim, Yingtao Bi, Ramana V. Davuluri:
Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares. 296-297 - Rajanikanth Vadigepalli, Joshua Ogony, Helen Anni:
Ethanol Effects on Transcription Factor Network Regulating Stem Cell Differentiation. 298-299 - Ionut Bebu, Françoise Seillier-Moiseiwitsch, Jing Wu, Thomas Mathew:
Gene Set Analysis with Covariates. 300-301 - Hsiang-Yuan Yeh, Yi-Yu Liu, Cheng-Yu Yeh, Von-Wun Soo:
Identifying Prostate Cancer-Related Networks from Microarray Data Based on Genotype-Phenotype Networks Using Markov Blanket Search. 302-303 - Tantan Liu, Fan Wang, Gagan Agrawal:
Instance Discovery and Schema Matching with Applications to Biological Deep Web Data Integration. 304-305 - Michele Lombardi, Luca Benini, Abhishek Garg, Giovanni De Micheli:
Methods for Designing Reliable Probe Arrays. 306-307 - Fotis E. Psomopoulos, Pericles A. Mitkas:
Multi Level Clustering of Phylogenetic Profiles. 308-309 - Zhenqiu Liu, Terry Hyslop:
Partial AUC for Differentiated Gene Detection. 310-311 - Marco Tagliasacchi, Roberto Sarati, Marco Masseroli:
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering. 312-313 - Kemal Aydin, Rustu Murat Demirer, Coskun Bayrak:
Use of Hilbert Huang Transform in Uterine Contraction Analysis. 314-315 - Jack W. London, Devjani Chatterjee:
Using the Semantically Interoperable Biospecimen Repository Application, caTissue: End User Deployment Lessons Learned. 316-317
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