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ORCIDFrontiers in Neuroinformatics, Volume 7
Volume 7, 2013
- Heraldo Memelli
, Benjamin Torben-Nielsen, James R. Kozloski:
Self-referential forces are sufficient to explain different dendritic morphologies. 1 - Lucia Billeci, Chiara Magliaro, Giovanni Pioggia, Arti Ahluwalia:
NEuronMOrphological analysis tool: open-source software for quantitative morphometrics. 2 - Kunjan D. Rana, Lucia Maria Vaina, Matti S. Hämäläinen:
A fast statistical significance test for baseline correction and comparative analysis in phase locking. 3 - Roy Ben-Shalom, Gilad Liberman, Alon Korngreen:
Accelerating compartmental modeling on a graphical processing unit. 4 - Kristin Hansson, Mehrdad Jafari-Mamaghani, Patrik Krieger:
RipleyGUI: software for analyzing spatial patterns in 3D cell distributions. 5 - Adam B. Barrett, Lionel C. Barnett:
Granger causality is designed to measure effect, not mechanism. 6 - Sarah Maynard, Christopher J. Mungall, Suzanna E. Lewis, Fahim T. Imam, Maryann E. Martone:
A knowledge based approach to matching human neurodegenerative disease and animal models. 7 - Ethan Meyers:
The neural decoding toolbox. 8 - David Picado-Muiño, Christian Borgelt, Denise Berger, George L. Gerstein, Sonja Grün:
Finding neural assemblies with frequent item set mining. 9 - Paula Leon, Stuart Knock, Michael Marmaduke Woodman, Lia Domide, Jochen Mersmann, Anthony Randal McIntosh, Viktor K. Jirsa:
The Virtual Brain: a simulator of primate brain network dynamics. 10 - Martin Telefont:
Bookreview of principles of data integration. 11 - Russell A. Poldrack, Deanna M. Barch, Jason P. Mitchell, Tor D. Wager, Anthony D. Wagner, Joseph T. Devlin, Chad Cumba, Oluwasanmi Koyejo, Michael P. Milham:
Toward open sharing of task-based fMRI data: the OpenfMRI project. 12 - Are Losnegård, Arvid Lundervold, Erlend Hodneland:
White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation. 13 - Thomas V. Wiecki, Imri Sofer, Michael Joshua Frank:
HDDM: Hierarchical Bayesian estimation of the Drift-Diffusion Model in Python. 14 - François Budin, Marion Hoogstoel, Patrick Reynolds, Michael Grauer, Shonagh K. O'Leary-Moore, Ipek Oguz:
Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. 15 - Adrian Stefan Andronache, Cristina Rosazza, Davide Sattin, Matilde Leonardi, Ludovico D'Incerti, Ludovico Minati:
Impact of functional MRI data preprocessing pipeline on default-mode network detectability in patients with disorders of consciousness. 16 - Rebekah C. Evans, Sridevi Polavaram:
Growing a garden of neurons. 17 - Stephen D. Larson, Maryann E. Martone:
NeuroLex.org: an online framework for neuroscience knowledge. 18 - Roger V. Hoang, Devyani Tanna, Laurence C. Jayet Bray, Sergiu M. Dascalu, Frederick C. Harris Jr.:
A novel CPU/GPU simulation environment for large-scale biologically realistic neural modeling. 19 - Jeremy Cockfield, Kyungmin Su, Kay A. Robbins:
MOBBED: a computational data infrastructure for handling large collections of event-rich time series datasets in MATLAB. 20 - David Shin, I. Burak Özyurt, Thomas T. Liu:
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. 21 - Matthias Ehrlich, René Schüffny:
Neural Schematics as a unified formal graphical representation of large-scale Neural Network Structures. 22 - Wen Li, Nancy Andreasen, Peg Nopoulos, Vincent Magnotta:
Automated parcellation of the brain surface generated from magnetic resonance images. 23 - Verónica Mäki-Marttunen, Ibai Díez, Jesús M. Cortés, Dante R. Chialvo, Mirta Villarreal:
Disruption of transfer entropy and inter-hemispheric brain functional connectivity in patients with disorder of consciousness. 24 - Lei Wang, Alexander Kogan, Derin J. Cobia, Kathryn I. Alpert, Anthony Kolasny, Michael I. Miller, Daniel S. Marcus:
Northwestern University Schizophrenia Data and Software Tool (NUSDAST). 25 - Robert Pröpper, Klaus Obermayer:
Spyke Viewer: a flexible and extensible platform for electrophysiological data analysis. 26 - Hongzhi Wang, Paul A. Yushkevich:
Multi-atlas segmentation with joint label fusion and corrective learning - an open source implementation. 27 - Robert A. McDougal, Michael L. Hines, William W. Lytton:
Reaction-diffusion in the NEURON simulator. 28 - Eun Young Kim, Hans J. Johnson:
Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration. 29 - Olusola Ajilore, Liang Zhan, Johnson J. GadElkarim, Aifeng Zhang, Jamie Feusner, Shaolin Yang, Paul M. Thompson, Anand R. Kumar, Alex D. Leow:
Constructing the resting state structural connectome. 30 - Michael I. Miller, Andreia V. Faria, Kenichi Oishi, Susumu Mori:
High-throughput neuro-imaging informatics. 31 - Richard Beare, Jian Chen, Christopher L. Adamson, Timothy J. Silk, Deanne K. Thompson, Joseph Yuan-Mou Yang, Vickie Anderson, Marc L. Seal, Amanda G. Wood:
Brain extraction using the watershed transform from markers. 32 - Gerick M. H. Lee, Sara Fattinger, Anne-Laure Mouthon, Quentin Noirhomme, Reto Huber:
Electroencephalogram approximate entropy influenced by both age and sleep. 33 - Ján Antolík, Andrew P. Davison:
Integrated workflows for spiking neuronal network simulations. 34 - Kishore R. Mosaliganti, Arnaud Gelas, Sean G. Megason:
An efficient, scalable, and adaptable framework for solving generic systems of level-set PDEs. 35 - Cyrille Rossant, Kenneth D. Harris:
Hardware-accelerated interactive data visualization for neuroscience in Python. 36 - José Luis Pérez Velazquez, Roberto Fernández Galán:
Information gain in the brain's resting state: A new perspective on autism. 37 - Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns, Eilis Boudreau, M. Kemal Sönmez:
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. 38 - Nicholas J. Tustison, Brian B. Avants:
Explicit B-spline regularization in diffeomorphic image registration. 39 - Mario Michael Krell, Sirko Straube, Anett Seeland, Hendrik Wöhrle, Johannes Teiwes, Jan Hendrik Metzen, Elsa Andrea Kirchner, Frank Kirchner:
pySPACE - a signal processing and classification environment in Python. 40 - Henrik Lindén, Espen Hagen, Szymon Leski, Eivind S. Norheim, Klas H. Pettersen, Gaute T. Einevoll:
LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. 41 - Ioannis Vlachos, Yury V. Zaytsev, Sebastian Spreizer, Ad Aertsen, Arvind Kumar:
Neural system prediction and identification challenge. 43 - Jean-Luc Richard Stevens, Marco Elver, James A. Bednar:
An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook. 44 - Bradley C. Lowekamp, David T. Chen, Luis Ibáñez, Daniel J. Blezek:
The Design of SimpleITK. 45 - Michael Grauer, Patrick Reynolds, Marion Hoogstoel, François Budin, Martin Andreas Styner, Ipek Oguz:
A midas plugin to enable construction of reproducible web-based image processing pipelines. 46 - Michael J. Hull, David J. Willshaw:
morphforge: a toolbox for simulating small networks of biologically detailed neurons in Python. 47 - Trevor Bekolay, James Bergstra, Eric Hunsberger, Travis DeWolf, Terrence C. Stewart, Daniel Rasmussen, Feng-Xuan Choo, Aaron Voelker, Chris Eliasmith:
Nengo: a Python tool for building large-scale functional brain models. 48 - Sebastian Muehlboeck, Eric Westman, Andrew Simmons:
TheHiveDB image data management and analysis framework. 49 - Denis P. Shamonin, Esther Bron, Boudewijn P. F. Lelieveldt, Marion Smits, Stefan Klein, Marius Staring:
Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease. 50 - Audrey R. Verde, François Budin, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Mihye Ahn, Hans J. Johnson, Joy T. Matsui, Heather Cody Hazlett, Anuja Sharma, Casey Goodlett, Yundi Shi, Sylvain Gouttard, Clement Vachet, Joseph Piven, Hongtu Zhu, Guido Gerig, Martin Andreas Styner:
UNC-Utah NA-MIC framework for DTI fiber tract analysis. 51 - Jonas Kubilius:
A framework for streamlining research workflow in neuroscience and psychology. 52 - Alexei Ossadtchi, Platon Pronko, Sylvain Baillet, Mark E. Pflieger, Tatiana Alexandrovna Stroganova:
Mutual information spectrum for selection of event-related spatial components. Application to eloquent motor cortex mapping. 53
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