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Hugues Richard
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2020 – today
- 2022
- [b1]Hugues Richard:
Statistical methods for analysing high throughput sequencing data. (Méthodes statistiques pour l'analyse des données de séquençage à haut débit). Sorbonne University, Paris, France, 2022 - [j11]Alice Wittig, Fábio Miranda, Martin Hölzer, Tom Altenburg, Jakub M. Bartoszewicz, Sebastian Beyvers, Marius A. Dieckmann, Ulrich Genske, Sven H. Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, Julius Tembrockhaus, Bernhard Y. Renard, Stephan Fuchs:
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. Bioinform. 38(17): 4223-4225 (2022) - 2020
- [j10]Laurent David, Riccardo Vicedomini, Hugues Richard, Alessandra Carbone:
Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A. Bioinform. 36(13): 3975-3981 (2020)
2010 – 2019
- 2018
- [j9]Chadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac:
DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. BMC Bioinform. 19(1): 223:1-223:10 (2018) - [j8]Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes:
Meet-U: Educating through research immersion. PLoS Comput. Biol. 14(3) (2018) - 2017
- [p1]David Weese, Marcel H. Schulz, Hugues Richard:
DNA-Seq Error Correction Based on Substring Indices. Algorithms for Next-Generation Sequencing Data 2017: 147-166 - 2015
- [j7]Alexandre Gillet-Markowska, Hugues Richard, Gilles Fischer, Ingrid Lafontaine:
Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinform. 31(6): 801-808 (2015) - 2014
- [j6]Bogdan Mirauta, Pierre Nicolas, Hugues Richard:
Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. Bioinform. 30(10): 1409-1416 (2014) - [j5]Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard:
Fiona: a parallel and automatic strategy for read error correction. Bioinform. 30(17): 356-363 (2014) - 2013
- [c1]Bogdan Mirauta, Pierre Nicolas, Hugues Richard:
Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments. ICIAP Workshops 2013: 418-427
2000 – 2009
- 2005
- [j4]Vincent Miele, Pierre-Yves Bourguignon, David Robelin, Grégory Nuel, Hugues Richard:
seq++: analyzing biological sequences with a range of Markov-related models. Bioinform. 21(11): 2783-2784 (2005) - 2003
- [j3]David Robelin, Hugues Richard, Bernard Prum:
SIC: a tool to detect short inverted segments in a biological sequence. Nucleic Acids Res. 31(13): 3669-3671 (2003) - [j2]Hugues Richard, Grégory Nuel:
SPA: simple web tool to assess statistical significance of DNA patterns. Nucleic Acids Res. 31(13): 3679-3681 (2003) - 2002
- [j1]Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath:
Occurrence Probability of Structured Motifs in Random Sequences. J. Comput. Biol. 9(6): 761-773 (2002)
Coauthor Index
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