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2020 – today
- 2024
[j58]Yuansheng Liu
, Xinyan Xia, Yongshun Gong, Bosheng Song, Xiangxiang Zeng:
SSR-DTA: Substructure-aware multi-layer graph neural networks for drug-target binding affinity prediction. Artif. Intell. Medicine 157: 102983 (2024)- [j57]Linlin Hou, Hongxin Xiang, Xiangxiang Zeng, Dongsheng Cao, Li Zeng, Bosheng Song:
Attribute-guided prototype network for few-shot molecular property prediction. Briefings Bioinform. 25(5) (2024) - [j56]Xiu Yin, Xiyu Liu, Jinpeng Dai, Bosheng Song, Zheng Han, Chunqiu Xia, Dengwang Li, Jie Xue:
Deep synergetic spiking neural P systems for the overall survival time prediction of glioblastoma patients. Expert Syst. Appl. 245: 123032 (2024) - [j55]Ning Cheng, Li Wang, Yiping Liu, Bosheng Song, Changsong Ding:
HANSynergy: Heterogeneous Graph Attention Network for Drug Synergy Prediction. J. Chem. Inf. Model. 64(10): 4334-4347 (2024) - [j54]Yanyan Li, Bosheng Song, Yuansheng Liu, Xiangxiang Zeng, Shengye Huang:
Dynamic threshold spiking neural P systems with weights and multiple channels. Theor. Comput. Sci. 1010: 114697 (2024) - [j53]Xiangzhen Shen, Zimeng Li, Yuansheng Liu, Bosheng Song, Xiangxiang Zeng:
PEB-DDI: A Task-Specific Dual-View Substructural Learning Framework for Drug-Drug Interaction Prediction. IEEE J. Biomed. Health Informatics 28(1): 569-579 (2024) - [i5]Tengfei Ma, Xiang Song, Wen Tao, Mufei Li, Jiani Zhang, Xiaoqin Pan, Jianxin Lin, Bosheng Song, Xiangxiang Zeng:
KGExplainer: Towards Exploring Connected Subgraph Explanations for Knowledge Graph Completion. CoRR abs/2404.03893 (2024) - [i4]Zhixiang Cheng, Hongxin Xiang, Pengsen Ma, Li Zeng, Xin Jin, Xixi Yang, Jianxin Lin, Yang Deng, Bosheng Song, Xinxin Feng, Changhui Deng, Xiangxiang Zeng:
MaskMol: Knowledge-guided Molecular Image Pre-Training Framework for Activity Cliffs. CoRR abs/2409.12926 (2024) - 2023
- [j52]Jing Jiang, Junlin Xu, Yuansheng Liu, Bosheng Song, Xiulan Guo, Xiangxiang Zeng, Quan Zou:
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder. Briefings Bioinform. 24(3) (2023) - [j51]Xuan Lin, Lichang Dai, Yafang Zhou, Zu-Guo Yu, Wen Zhang, Jian-Yu Shi, Dong-Sheng Cao, Li Zeng, Haowen Chen, Bosheng Song, Philip S. Yu, Xiangxiang Zeng:
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction. Briefings Bioinform. 24(4) (2023) - [j50]Yuansheng Liu, Xiangzhen Shen, Yongshun Gong, Yiping Liu, Bosheng Song, Xiangxiang Zeng:
Sequence Alignment/Map format: a comprehensive review of approaches and applications. Briefings Bioinform. 24(5) (2023) - [j49]Bosheng Song, Kenli Li, Xiangxiang Zeng, Mario J. Pérez-Jiménez, Claudio Zandron:
Monodirectional evolutional symport tissue P systems with channel states and cell division. Sci. China Inf. Sci. 66(3) (2023) - [j48]Jie Xue, Deting Kong, Liwen Ren, Bosheng Song, Xiyu Liu, Guanzhong Gong, Dengwang Li, Hongyan Zhang:
Spiking neural P system with synaptic vesicles and applications in multiple brain metastasis segmentation. Inf. Sci. 625: 620-638 (2023) - [j47]Linqiang Pan, Bosheng Song, Claudio Zandron:
On the computational efficiency of tissue P systems with evolutional symport/antiport rules. Knowl. Based Syst. 262: 110266 (2023) - [j46]David Orellana-Martín, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez:
Tissue P systems with evolutional communication rules with two objects in the left-hand side. Nat. Comput. 22(1): 119-132 (2023) - [j45]Jie Xue, Qi Li, Xiyu Liu, Yujie Guo, Jie Lu, Bosheng Song, Pu Huang, Qiong An, Guanzhong Gong, Dengwang Li:
Hybrid neural-like P systems with evolutionary channels for multiple brain metastases segmentation. Pattern Recognit. 142: 109651 (2023) - [j44]Bosheng Song, Kenli Li, David Orellana-Martín, Xiangxiang Zeng, Mario J. Pérez-Jiménez:
Tissue P Systems With States in Cells. IEEE Trans. Computers 72(9): 2561-2570 (2023) - [j43]Xixi Yang, Zhangming Niu, Yuansheng Liu, Bosheng Song, Weiqiang Lu, Li Zeng, Xiangxiang Zeng:
Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1200-1210 (2023) - [j42]Yanyan Li, Bosheng Song, Xiangxiang Zeng:
Spiking neural P systems with weights and delays on synapses. Theor. Comput. Sci. 968: 114028 (2023) - [j41]Tengfei Ma, Xuan Lin, Bosheng Song, Philip S. Yu, Xiangxiang Zeng:
KG-MTL: Knowledge Graph Enhanced Multi-Task Learning for Molecular Interaction. IEEE Trans. Knowl. Data Eng. 35(7): 7068-7081 (2023) - [j40]Jie Xue, Liwen Ren, Bosheng Song, Yujie Guo, Jie Lu, Xiyu Liu, Guanzhong Gong, Dengwang Li:
Hypergraph-Based Numerical Neural-Like P Systems for Medical Image Segmentation. IEEE Trans. Parallel Distributed Syst. 34(4): 1202-1214 (2023) - [i3]Xuan Lin, Lichang Dai, Yafang Zhou, Zu-Guo Yu, Wen Zhang, Jian-Yu Shi, Dong-Sheng Cao, Li Zeng, Haowen Chen, Bosheng Song, Philip S. Yu, Xiangxiang Zeng:
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction. CoRR abs/2306.05257 (2023) - [i2]Tengfei Ma, Yujie Chen, Wen Tao, Dashun Zheng, Xuan Lin, Patrick Cheong-lao Pang, Yiping Liu, Yijun Wang, Bosheng Song, Xiangxiang Zeng:
Learning to Denoise Unreliable Interactions for Link Prediction on Biomedical Knowledge Graph. CoRR abs/2312.06682 (2023) - 2022
- [j39]Bosheng Song, Xiaoyan Luo, Xiaoli Luo, Yuansheng Liu, Zhangming Niu, Xiangxiang Zeng:
Learning spatial structures of proteins improves protein-protein interaction prediction. Briefings Bioinform. 23(2) (2022) - [j38]Linlin Zhuo, Bosheng Song, Yuansheng Liu, Zejun Li, Xiangzheng Fu:
Predicting ncRNA-protein interactions based on dual graph convolutional network and pairwise learning. Briefings Bioinform. 23(6) (2022) - [j37]Bosheng Song, Kenli Li, David Orellana-Martín, Mario J. Pérez-Jiménez, Ignacio Pérez-Hurtado:
A Survey of Nature-Inspired Computing: Membrane Computing. ACM Comput. Surv. 54(1): 22:1-22:31 (2022) - [j36]Yanyan Li, Bosheng Song, Xiangxiang Zeng:
Rule synchronization for monodirectional tissue-like P systems with channel states. Inf. Comput. 285(Part): 104895 (2022) - [j35]Bosheng Song, Kenli Li, Xiangxiang Zeng:
Monodirectional Evolutional Symport Tissue P Systems With Promoters and Cell Division. IEEE Trans. Parallel Distributed Syst. 33(2): 332-342 (2022) - 2021
- [j34]Yu Cheng, Yongshun Gong, Yuansheng Liu, Bosheng Song, Quan Zou:
Molecular design in drug discovery: a comprehensive review of deep generative models. Briefings Bioinform. 22(6) (2021) - [j33]Bosheng Song, Fen Li, Yuansheng Liu, Xiangxiang Zeng:
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison. Briefings Bioinform. 22(6) (2021) - [j32]Yujie Chen, Tengfei Ma, Xixi Yang, Jianmin Wang, Bosheng Song, Xiangxiang Zeng:
MUFFIN: multi-scale feature fusion for drug-drug interaction prediction. Bioinform. 37(17): 2651-2658 (2021) - [j31]David Orellana-Martín, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez:
Tuning Frontiers of Efficiency in Tissue P Systems with Evolutional Communication Rules. Complex. 2021: 7120840:1-7120840:14 (2021) - [j30]Yu Jin, Bosheng Song, Yanyan Li, Ying Zhu:
Time-free Solution to Independent Set Problem using P Systems with Active Membranes. Fundam. Informaticae 182(3): 243-255 (2021) - [j29]Bosheng Song, Linqiang Pan:
Rule synchronization for tissue P systems. Inf. Comput. 281: 104685 (2021) - [j28]Bosheng Song, Shengye Huang, Xiangxiang Zeng:
The computational power of monodirectional tissue P systems with symport rules. Inf. Comput. 281: 104751 (2021) - [j27]Bosheng Song, Xiangxiang Zeng, Alfonso Rodríguez-Patón:
Monodirectional tissue P systems with channel states. Inf. Sci. 546: 206-219 (2021) - [j26]Bosheng Song, Xiangxiang Zeng:
Solving a PSPACE-complete problem by symport/antiport P systems with promoters and membrane division. J. Membr. Comput. 3(4): 296-302 (2021) - [j25]Bosheng Song, Xiangxiang Zeng, Min Jiang, Mario J. Pérez-Jiménez:
Monodirectional Tissue P Systems With Promoters. IEEE Trans. Cybern. 51(1): 438-450 (2021) - [i1]Yu Jin, Bosheng Song, Yanyan Li, Ying Zhu:
Time-free solution to independent set problem using P systems with active membranes. CoRR abs/2106.08078 (2021) - 2020
- [j24]Linqiang Pan, Bosheng Song:
P Systems with Rule Production and Removal. Fundam. Informaticae 171(1-4): 313-329 (2020) - [j23]Bosheng Song, Kenli Li, David Orellana-Martín, Luis Valencia-Cabrera, Mario J. Pérez-Jiménez:
Cell-like P systems with evolutional symport/antiport rules and membrane creation. Inf. Comput. 275: 104542 (2020) - [j22]Luis Valencia-Cabrera, Bosheng Song:
Tissue P systems with promoter simulation with MeCoSim and P-Lingua framework. J. Membr. Comput. 2(2): 95-107 (2020) - [j21]Bosheng Song, Xiaoyan Luo, Luis Valencia-Cabrera, Xiangxiang Zeng:
The computational power of cell-like P systems with one protein on membrane. J. Membr. Comput. 2(4): 332-340 (2020) - [j20]Artiom Alhazov, Rudolf Freund, Sergiu Ivanov, Linqiang Pan, Bosheng Song:
Time-freeness and clock-freeness and related concepts in P systems. Theor. Comput. Sci. 805: 127-143 (2020) - [j19]David Orellana-Martín, Miguel Ángel Martínez-del-Amor, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez:
P systems with symport/antiport rules: When do the surroundings matter? Theor. Comput. Sci. 805: 206-217 (2020) - [j18]Linqiang Pan, David Orellana-Martín, Bosheng Song, Mario J. Pérez-Jiménez:
Cell-like P systems with polarizations and minimal rules. Theor. Comput. Sci. 816: 1-18 (2020)
2010 – 2019
- 2018
- [j17]Linqiang Pan, Bosheng Song, Luis Valencia-Cabrera, Mario J. Pérez-Jiménez:
The Computational Complexity of Tissue P Systems with Evolutional Symport/Antiport Rules. Complex. 2018: 3745210:1-3745210:21 (2018) - [j16]Henry N. Adorna, Linqiang Pan, Bosheng Song:
On Distributed Solution to SAT by Membrane Computing. Int. J. Comput. Commun. Control 13(3): 303-320 (2018) - [j15]Linqiang Pan, Bosheng Song, Atulya K. Nagar, K. G. Subramanian:
Language generating alphabetic flat splicing P systems. Theor. Comput. Sci. 724: 28-34 (2018) - [c11]Bosheng Song, Fei Xu, Linqiang Pan:
On Languages Generated by Context-Free Matrix Insertion-Deletion Systems with Exo-Operations. Enjoying Natural Computing 2018: 279-290 - [p1]K. G. Subramanian, Sastha Sriram, Bosheng Song, Linqiang Pan:
An Overview of 2D Picture Array Generating Models Based on Membrane Computing. Reversibility and Universality 2018: 333-356 - 2017
- [j14]Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan:
An efficient time-free solution to QSAT problem using P systems with proteins on membranes. Inf. Comput. 256: 287-299 (2017) - [j13]Bosheng Song, Cheng Zhang, Linqiang Pan:
Tissue-like P systems with evolutional symport/antiport rules. Inf. Sci. 378: 177-193 (2017) - [j12]Bosheng Song, Tao Song, Linqiang Pan:
A time-free uniform solution to subset sum problem by tissue P systems with cell division. Math. Struct. Comput. Sci. 27(1): 17-32 (2017) - [c10]Kalpana Mahalingam, Prithwineel Paul, Bosheng Song, Linqiang Pan, K. G. Subramanian:
Derivation Languages of Splicing P Systems. BIC-TA 2017: 487-501 - [c9]Henry N. Adorna, Artiom Alhazov, Linqiang Pan, Bosheng Song:
Simulating Evolutional Symport/Antiport by Evolution-Communication and vice versa in Tissue P Systems with Parallel Communication. Int. Conf. on Membrane Computing 2017: 1-14 - [c8]Linqiang Pan, Bosheng Song, Gexiang Zhang:
Tissue P Systems with Rule Production/Removal. Int. Conf. on Membrane Computing 2017: 230-244 - 2016
- [j11]Luis F. Macías-Ramos, Bosheng Song, Luis Valencia-Cabrera, Linqiang Pan, Mario J. Pérez-Jiménez:
Membrane fission: A computational complexity perspective. Complex. 21(6): 321-334 (2016) - [j10]Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez:
Tissue P Systems with Protein on Cells. Fundam. Informaticae 144(1): 77-107 (2016) - [j9]Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan:
An efficient time-free solution to SAT problem by P systems with proteins on membranes. J. Comput. Syst. Sci. 82(6): 1090-1099 (2016) - [j8]Linqiang Pan, Gheorghe Paun, Bosheng Song:
Flat maximal parallelism in P systems with promoters. Theor. Comput. Sci. 623: 83-91 (2016) - [j7]Bosheng Song, Linqiang Pan:
The computational power of tissue-like P systems with promoters. Theor. Comput. Sci. 641: 43-52 (2016) - [c7]Rodica Ceterchi, Linqiang Pan, Bosheng Song, K. G. Subramanian:
Matrix Flat Splicing Systems. BIC-TA (1) 2016: 54-63 - [c6]Wenbo Dong, Kang Zhou, Huaqing Qi, Cheng He, Jun Zhang, Bosheng Song:
A Multi-objective Optimization Algorithm Based on Tissue P System for VRPTW. BIC-TA (2) 2016: 285-301 - [c5]Fangxiu Wang, Kang Zhou, Huaqing Qi, Bosheng Song:
An Improved Algorithm for Constructing Binary Trees Using the Traversal Sequences. BIC-TA (2) 2016: 475-488 - [c4]Jiangrong Liu, Kang Zhou, Shan Zeng, Huaqing Qi, Bosheng Song, Tingfang Wu:
Improved Multi-step Iterative Algorithms for the Fixed Points of Strongly Pseudo-Contractive Mappings. BIC-TA (2) 2016: 489-496 - [c3]Linqiang Pan, Bosheng Song, K. G. Subramanian:
Rewriting P Systems with Flat-Splicing Rules. Int. Conf. on Membrane Computing 2016: 340-351 - 2015
- [j6]Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan:
Efficient solutions to hard computational problems by P systems with symport/antiport rules and membrane division. Biosyst. 130: 51-58 (2015) - [j5]Luis F. Macías-Ramos, Luis Valencia-Cabrera, Bosheng Song, Tao Song, Linqiang Pan, Mario J. Pérez-Jiménez:
A P_Lingua Based Simulator for P Systems with Symport/Antiport Rules. Fundam. Informaticae 139(2): 211-227 (2015) - [j4]Bosheng Song, Tao Song, Linqiang Pan:
Time-free solution to SAT problem by P systems with active membranes and standard cell division rules. Nat. Comput. 14(4): 673-681 (2015) - [j3]Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan:
Computational efficiency and universality of timed P systems with membrane creation. Soft Comput. 19(11): 3043-3053 (2015) - [j2]Bosheng Song, Linqiang Pan:
Computational efficiency and universality of timed P systems with active membranes. Theor. Comput. Sci. 567: 74-86 (2015) - 2014
- [c2]Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan:
Computational Efficiency and Universality of Timed P Systems with Membrane Creation. BIC-TA 2014: 389-394 - 2011
- [j1]Zhixiang Yin, Bosheng Song:
DNA Self-assembly Model for Matrix Addition Problem. J. Comput. 6(4): 698-704 (2011) - 2010
- [c1]Zhixiang Yin, Hua Chen, Bosheng Song:
Plasmid DNA computing model of 0-1 programming problem. BIC-TA 2010: 148-151
Coauthor Index
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