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ORCIDJiri Filipovic
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2020 – today
- 2024
[j14]Floris-Jan Willemsen
, Richard Schoonhoven, Jiri Filipovic, Jacob O. Tørring, Rob van Nieuwpoort, Ben van Werkhoven:
A methodology for comparing optimization algorithms for auto-tuning. Future Gener. Comput. Syst. 159: 489-504 (2024)- [c13]Suren Harutyunyan, Eduardo César, Anna Sikora, Jiri Filipovic, Akash Dutta, Ali Jannesari, Jordi Alcaraz:
Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques. Euro-Par (1) 2024: 18-32 - [c12]Miroslav Demek, Jiri Filipovic:
Towards Dynamic Autotuning of SpMV in CUSP Library. IPDPS (Workshops) 2024: 14-22 - 2023
- [j13]Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar:
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39(8) (2023) - [j12]David Strelák, David Myska, Filip Petrovic, Jan Polák, Jaroslav Olha, Jiri Filipovic:
Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes. Computing 105(11): 2389-2417 (2023) - [j11]Filip Petrovic, Jiri Filipovic:
Kernel Tuning Toolkit. SoftwareX 22: 101385 (2023) - [c11]Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster:
Towards a Benchmarking Suite for Kernel Tuners. IPDPS Workshops 2023: 724-733 - [i5]Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster:
Towards a Benchmarking Suite for Kernel Tuners. CoRR abs/2303.08976 (2023) - 2022
- [j10]Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic:
Using hardware performance counters to speed up autotuning convergence on GPUs. J. Parallel Distributed Comput. 160: 16-35 (2022) - [c10]Petra Nemcová, Jana Hozzová, Jiri Filipovic:
Improving ligand transport trajectory within flexible receptor in CaverDock. SAC 2022: 619-626 - 2021
- [i4]Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic:
Using hardware performance counters to speed up autotuning convergence on GPUs. CoRR abs/2102.05297 (2021) - [i3]Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic:
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. CoRR abs/2102.05299 (2021) - 2020
- [j9]Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic:
Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. Concurr. Comput. Pract. Exp. 32(21) (2020) - [j8]Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic:
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Gener. Comput. Syst. 108: 161-177 (2020) - [j7]Jiri Filipovic, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský:
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1625-1638 (2020)
2010 – 2019
- 2019
- [j6]Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský:
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35(23): 4986-4993 (2019) - [j5]David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic:
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. Int. J. High Perform. Comput. Appl. 33(5) (2019) - [j4]Jan Stourac, Ondrej Vavra, Piia Kokkonen, Jiri Filipovic, Gaspar R. P. Pinto, Jan Brezovsky, Jirí Damborský, David Bednar:
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic Acids Res. 47(Webserver-Issue): W414-W422 (2019) - [c9]Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic:
Exploiting Historical Data: Pruning Autotuning Spaces and Estimating the Number of Tuning Steps. Euro-Par Workshops 2019: 295-307 - [i2]Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic:
A Benchmark Set of Highly-efficient CUDA and OpenCL Kernels and its Dynamic Autotuning with Kernel Tuning Toolkit. CoRR abs/1910.08498 (2019) - 2018
- [c8]David Strelák, Jiri Filipovic:
Performance analysis and autotuning setup of the cuFFT library. ANDARE@PACT 2018: 1:1-1:6 - 2017
- [c7]Jiri Filipovic, Filip Petrovic, Siegfried Benkner:
Autotuning of OpenCL Kernels with Global Optimizations. ANDARE@PACT 2017: 2:1-2:6 - 2015
- [j3]Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska:
Optimizing CUDA code by kernel fusion: application on BLAS. J. Supercomput. 71(10): 3934-3957 (2015) - [c6]Jiri Filipovic, Jan Plhak, David Strelák:
Acceleration of dRMSD calculation and efficient usage of GPU caches. HPCS 2015: 47-54 - [c5]Jiri Filipovic, Siegfried Benkner:
OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. SBAC-PAD 2015: 98-105 - 2013
- [i1]Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska:
Optimizing CUDA Code By Kernel Fusion---Application on BLAS. CoRR abs/1305.1183 (2013) - 2011
- [j2]Jan Fousek, Jiri Filipovic, Matus Madzin:
Automatic fusions of CUDA-GPU kernels for parallel map. SIGARCH Comput. Archit. News 39(4): 98-99 (2011) - [j1]Igor Peterlík, Jiri Filipovic:
Distributed Construction of Configuration Spaces for Real-Time Haptic Deformation Modeling. IEEE Trans. Ind. Electron. 58(8): 3205-3212 (2011) - 2010
- [c4]Jan Fousek, Tomas Golembiovsky, Jiri Filipovic, Igor Peterlík:
Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. MEMICS 2010: 26-31
2000 – 2009
- 2009
- [c3]Jiri Filipovic, Igor Peterlík, Ludek Matyska:
On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies. WHC 2009: 24-29 - 2008
- [c2]Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet:
Job Provenance - Insight into Very Large Provenance Datasets. IPAW 2008: 144-151 - [c1]Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska:
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services. PDP 2008: 447-454
Coauthor Index
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last updated on 2024-09-10 01:14 CEST by the dblp team
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