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2020 – today
- 2023
[j23]Andreas Weber
, Maarten Heerlien, Eulàlia Gassó Miracle, Katherine Wolstencroft:
Introduction to the Special Issue on Digital Natural and Cultural Heritage: Opportunities and Challenges. ACM Journal on Computing and Cultural Heritage 16(1): 1e:1-1e:4 (2023)- [c32]Yi Chen, Fons J. Verbeek, Katherine Wolstencroft:
FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results. SWAT4HCLS 2023: 72-81 - [c31]Karolis Cremers, Marco Roos, Katy Wolstencroft, Eleni Mina, Núria Queralt-Rosinach:
Structured review on Huntington's disease iron hypothesis. SWAT4HCLS 2023: 147-148 - 2022
- [j22]Mariam Basajja, Mutwalibi Nambobi, Katy Wolstencroft:
Possibility of Enhancing Digital Health Interoperability in Uganda through FAIR Data. Data Intell. 4(4): 899-916 (2022) - [e2]Katy Wolstencroft, Andrea Splendiani, M. Scott Marshall, Chris Baker, Andra Waagmeester, Marco Roos, Rutger A. Vos, Rianne Fijten, Leyla Jael Castro:
13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022, Virtual Event, Leiden, The Netherlands, January 10th to 14th, 2022. CEUR Workshop Proceedings 3127, CEUR-WS.org 2022 [contents] - 2021
- [j21]Yi Chen, Fons J. Verbeek, Katherine Wolstencroft:
Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations. BMC Bioinform. 22(1): 178 (2021) - [j20]Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft:
Large-scale zero-shot learning in the wild: Classifying zoological illustrations. Ecol. Informatics 62: 101222 (2021) - [e1]Andreas Weber, Maarten Heerlien, Eulàlia Gassó Miracle, Katherine Wolstencroft:
Proceedings of the International Conference Collect and Connect: Archives and Collections in a Digital Age, Leiden, the Netherlands, November 23-24, 2020. CEUR Workshop Proceedings 2810, CEUR-WS.org 2021 [contents] - [i3]Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft:
Perspectives on automated composition of workflows in the life sciences. F1000Research 10: 897 (2021)
2010 – 2019
- 2019
- [j19]Lise Stork, Andreas Weber, Eulalia Gasso Miracle, Fons J. Verbeek, Aske Plaat, H. Jaap van den Herik, Katherine Wolstencroft:
Semantic annotation of natural history collections. J. Web Semant. 59 (2019) - [c30]Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft:
Automated Semantic Annotation of Species Names in Handwritten Texts. ECIR (1) 2019: 667-680 - 2018
- [c29]Lise Stork, Andreas Weber, Eulalia Gasso Miracle, Katherine Wolstencroft:
Linking Natural History Collections. eScience 2018: 388-389 - [c28]Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft:
From Handwritten Manuscripts to Linked Data. TPDL 2018: 330-334 - 2017
- [j18]Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble:
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Res. 45(Database-Issue): D404-D407 (2017) - [c27]Andreas Weber, Mahya Ameryan, Katherine Wolstencroft, Lise Stork, Maarten Heerlien, Lambert Schomaker:
Towards a Digital Infrastructure for Illustrated Handwritten Archives. ITN-DCH 2017: 155-166 - 2016
- [c26]Lambert Schomaker, Andreas Weber, Michiel Thijssen, Maarten Heerlien, Aske Plaat, Siegfried Nijssen, Fons J. Verbeek, Michael S. Lew, Eulalia Gasso Miracle, Katy Wolstencroft, Ernest Suyver, Bart Verheij, Marco A. Wiering, René Dekker, Joost N. Kok, Lissa Roberts, H. Jaap van den Herik:
Making Sense of Illustrated Handwritten Archives. DH 2016: 674-676 - [c25]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Rostyk Kuzyakiv, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ODLS 2016: 1-2 - 2015
- [j17]Katherine Wolstencroft, Stuart Owen, Olga Krebs, Quyen Nguyen, Natalie J. Stanford, Martin Golebiewski, Andreas Weidemann, Meik Bittkowski, Lihua An, David Shockley, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
SEEK: a systems biology data and model management platform. BMC Syst. Biol. 9: 33 (2015) - [c24]Eleni Mina, Mark Thompson, Kristina M. Hettne, Willeke M. C. van Roon-Mom, Rajaram Kaliyaperumal, Eelke van der Horst, Katherine Wolstencroft, Barend Mons, Marco Roos:
Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. e-Science 2015: 118-125 - [c23]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ICBO 2015 - 2014
- [j16]Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos:
Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomed. Semant. 5: 41 (2014) - [c22]Joost N. Kok, Anna-Lena Lamprecht, Kenneth J. Turner, Katy Wolstencroft:
Track Introduction: Scientific Workflows. ISoLA (2) 2014: 404-406 - 2013
- [j15]Katherine Wolstencroft, Stuart Owen, Matthew Horridge, Simon Jupp, Olga Krebs, Jacky L. Snoep, Franco B. du Preez, Wolfgang Müller, Robert Stevens, Carole A. Goble:
Stealthy annotation of experimental biology by spreadsheets. Concurr. Comput. Pract. Exp. 25(4): 467-480 (2013) - [j14]Katherine Wolstencroft, Robert Haines, Donal Fellows, Alan R. Williams, David Withers, Stuart Owen, Stian Soiland-Reyes, Ian Dunlop, Aleksandra Nenadic, Paul Fisher, Jiten Bhagat, Khalid Belhajjame, Finn Bacall, Alex R. Hardisty, Abraham Nieva de la Hidalga, Maria P. Balcazar Vargas, Shoaib Sufi, Carole A. Goble:
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Res. 41(Webserver-Issue): 557-561 (2013) - [c21]Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Müller, Quyen Nguyen, Jacky L. Snoep, Carole A. Goble:
Semantic Data and Models Sharing in Systems Biology: The Just Enough Results Model and the SEEK Platform. ISWC (2) 2013: 212-227 - [i2]Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos:
Structuring research methods and data with the Research Object model: genomics workflows as a case study. CoRR abs/1311.2789 (2013) - 2012
- [j13]Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Katy Wolstencroft, Robert Stevens:
Populous: a tool for building OWL ontologies from templates. BMC Bioinform. 13(S-1): S5 (2012) - [c20]Katherine Wolstencroft, Stuart Owen, Carole A. Goble, Quyen Nguyen, Olga Krebs, Wolfgang Müller:
RightField: Semantic enrichment of Systems Biology data using spreadsheets. eScience 2012: 1-8 - [c19]Katy Wolstencroft, Stuart Owen, Matthew Horridge, Wolfgang Müller, Finn Bacall, Jacky L. Snoep, Franco B. du Preez, Quyen Nguyen, Olga Krebs, Carole A. Goble:
RightField: Scientific Knowledge Acquisition by Stealth through Ontology-Enabled Spreadsheets. EKAW 2012: 438-441 - [c18]Konstantinos Karasavvas, Katy Wolstencroft, Eleni Mina, Don Cruickshank, Alan R. Williams, David De Roure, Carole A. Goble, Marco Roos:
Opening new gateways to workflows for life scientists. HealthGrid 2012: 131-141 - [c17]Kristina M. Hettne, Katherine Wolstencroft, Khalid Belhajjame, Carole A. Goble, Eleni Mina, Harish Dharuri, David De Roure, Lourdes Verdes-Montenegro, Julián Garrido, Marco Roos:
Best Practices for Workflow Design: How to Prevent Workflow Decay. SWAT4LS 2012 - 2011
- [j12]Katy Wolstencroft, Stuart Owen, Matthew Horridge, Olga Krebs, Wolfgang Müller, Jacky L. Snoep, Franco B. du Preez, Carole A. Goble:
RightField: embedding ontology annotation in spreadsheets. Bioinform. 27(14): 2021-2022 (2011) - [c16]Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Katy Wolstencroft, Robert Stevens:
Populous: A Tool for Populating an Ontology. ICBO 2011 - [c15]Clemens Neudecker, Sven Schlarb, Zeki Mustafa Dogan, Paolo Missier, Shoaib Sufi, Alan R. Williams, Katy Wolstencroft:
An experimental workflow development platform for historical document digitisation and analysis. HIP@ICDAR 2011: 161-168 - 2010
- [j11]Steffen Möller, Hajo N. Krabbenhöft, Andreas Tille, David Paleino, Alan R. Williams, Katy Wolstencroft, Carole A. Goble, Richard C. G. Holland, Dominique Belhachemi, Charles Plessy:
Community-driven computational biology with Debian Linux. BMC Bioinform. 11(S-12): S5 (2010) - [j10]Jiten Bhagat, Franck Tanoh, Eric Nzuobontane, Thomas Laurent, Jerzy Orlowski, Marco Roos, Katy Wolstencroft, Sergejs Aleksejevs, Robert Stevens, Steve Pettifer, Rodrigo Lopez, Carole A. Goble:
BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Res. 38(Web-Server-Issue): 689-694 (2010) - [c14]David De Roure, Carole A. Goble, Sergejs Aleksejevs, Sean Bechhofer, Jiten Bhagat, Don Cruickshank, Paul Fisher, Nandkumar Kollara, Danius T. Michaelides, Paolo Missier, David R. Newman, Marcus Ramsden, Marco Roos, Katy Wolstencroft, Ed Zaluska, Jun Zhao:
The Evolution of myExperiment. eScience 2010: 153-160 - [c13]Katy Wolstencroft, Matthew Horridge, Stuart Owen, Wolfgang Müller, Finn Bacall, Jacky L. Snoep, Olga Krebs, Carole A. Goble:
Rightfield: Embedding Ontology Term Selection into Spreadsheets for the Annotation of Biological Data. ISWC (Posters & Demos) 2010 - [c12]Paolo Missier, Katy Wolstencroft, Franck Tanoh, Peter Li, Sean Bechhofer, Khalid Belhajjame, Steve Pettifer, Carole A. Goble:
Functional Units: Abstractions for Web Service Annotations. SERVICES 2010: 306-313 - [c11]Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Robert Stevens, Katy Wolstencroft:
Populous: A Tool for Populating Templates for OWL Ontologies. SWAT4LS 2010 - [i1]Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Robert Stevens, Katy Wolstencroft:
Populous: A tool for populating ontology templates. CoRR abs/1012.1745 (2010)
2000 – 2009
- 2009
- [j9]Antoon Goderis, Paul Fisher, Andrew Gibson, Franck Tanoh, Katy Wolstencroft, David De Roure, Carole A. Goble:
Benchmarking workflow discovery: a case study from bioinformatics. Concurr. Comput. Pract. Exp. 21(16): 2052-2069 (2009) - [j8]Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble, Khalid Belhajjame, Paolo Missier:
The data playground: An intuitive workflow specification environment. Future Gener. Comput. Syst. 25(4): 453-459 (2009) - [c10]Ingo H. C. Wassink, Paul E. van der Vet, Katy Wolstencroft, Pieter B. T. Neerincx, Marco Roos, Han Rauwerda, Timo M. Breit:
Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services. SERVICES I 2009: 314-321 - 2008
- [j7]Carole A. Goble, Robert Stevens, Duncan Hull, Katy Wolstencroft, Rodrigo Lopez:
Data curation + process curation=data integration + science. Briefings Bioinform. 9(6): 506-517 (2008) - [j6]Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield:
Solutions for data integration in functional genomics: a critical assessment and case study. Briefings Bioinform. 9(6): 532-544 (2008) - [c9]Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen:
Towards dynamic database infrastructures for mouse genetics. BIBE 2008: 1-7 - [c8]Khalid Belhajjame, Katy Wolstencroft, Óscar Corcho, Tom Oinn, Franck Tanoh, Alan R. Williams, Carole A. Goble:
Metadata Management in the Taverna Workflow System. CCGRID 2008: 651-656 - 2007
- [j5]Paul Fisher, Cornelia Hedeler, Katherine Wolstencroft, Helen Hulme, Harry Noyes, Stephen Kemp, Robert D. Stevens, Andy Brass:
A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. BMC Bioinform. 8(S-8) (2007) - [j4]Katy Wolstencroft, Pinar Alper, Duncan Hull, Chris Wroe, Phillip W. Lord, Robert D. Stevens, Carole A. Goble:
The myGrid ontology: bioinformatics service discovery. Int. J. Bioinform. Res. Appl. 3(3): 303-325 (2007) - [j3]Robert Stevens, Mikel Egaña Aranguren, Katy Wolstencroft, Ulrike Sattler, Nick Drummond, Matthew Horridge, Alan L. Rector:
Using OWL to model biological knowledge. Int. J. Hum. Comput. Stud. 65(7): 583-594 (2007) - [c7]Steve Pettifer, Katy Wolstencroft, Pinar Alper, Teresa K. Attwood, Alain Coletta, Carole A. Goble, Peter Li, Philip McDermott, James Marsh, Tom Oinn, James Sinnott, David Thorne:
myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences. DILS 2007: 59-70 - [c6]Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble:
The Data Playground: An Intuitive Workflow Specification Environment. eScience 2007: 59-68 - [c5]Andrew Gibson, Katy Wolstencroft, Robert Stevens:
Promotion of Ontological Comprehension: Exposing Terms and Metadata with Web 2.0. CKC 2007 - 2006
- [j2]Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole A. Goble, Matthew R. Pocock, Peter Li, Tom Oinn:
Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34(Web-Server-Issue): 729-732 (2006) - [c4]Katy Wolstencroft, Phillip W. Lord, Lydia Tabernero, Andy Brass, Robert Stevens:
Protein classification using ontology classification. ISMB (Supplement of Bioinformatics) 2006: 530-538 - [c3]Chris Rose, Daniele Turi, Alan R. Williams, Katy Wolstencroft, Christopher J. Taylor:
Web Services for the DDSM and Digital Mammography Research. Digital Mammography / IWDM 2006: 376-383 - 2005
- [j1]Katy Wolstencroft, Robin McEntire, Robert Stevens, Lydia Tabernero, Andy Brass:
Constructing ontology-driven protein family databases. Bioinform. 21(8): 1685-1692 (2005) - [c2]Katy Wolstencroft, Thomas M. Oinn, Carole A. Goble, Justin Ferris, Chris Wroe, Phillip W. Lord, Kevin Glover, Robert Stevens:
Panoply of Utilities in Taverna. e-Science 2005: 156-162 - [c1]Katy Wolstencroft, Andy Brass, Ian Horrocks, Phillip W. Lord, Ulrike Sattler, Daniele Turi, Robert Stevens:
A Little Semantic Web Goes a Long Way in Biology. ISWC 2005: 786-800
Coauthor Index
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