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2020 – today
- 2023
[j19]Kai-Li Chang
, Jia-Hong Chen, Tzu-Chieh Lin, Jun-Yi Leu, Cheng-Fu Kao, Jin Yung Wong, Huai-Kuang Tsai:
Short human eccDNAs are predictable from sequences. Briefings Bioinform. 24(3) (2023)- [j18]Yu-Hsin Chen, Kuan-Hao Chao, Jin Yung Wong, Chien-Fu Liu, Jun-Yi Leu, Huai-Kuang Tsai:
A feature extraction free approach for protein interactome inference from co-elution data. Briefings Bioinform. 24(4) (2023) - 2022
- [j17]Peng-Hsuan Li, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai, Hsueh-Fen Juan, Chien-Yu Chen, Jia-Hsin Huang:
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature. Nucleic Acids Res. 50(W1): 616-622 (2022)
2010 – 2019
- 2019
- [j16]Cheng-Kai Shiau, Jia-Hsin Huang, Huai-Kuang Tsai:
CATANA: a tool for generating comprehensive annotations of alternative transcript events. Bioinform. 35(8): 1414-1415 (2019) - 2017
- [j15]I-Man Ng, Jia-Hsin Huang, Shang-Chi Tsai, Huai-Kuang Tsai:
IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes. Database J. Biol. Databases Curation 2017: bax069 (2017) - 2015
- [j14]Zing Tsung-Yeh Tsai, Shin-Han Shiu, Huai-Kuang Tsai:
Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast. PLoS Comput. Biol. 11(8) (2015) - 2012
- [j13]Mei-Ju May Chen, Lih-Ching Chou, Tsung-Ting Hsieh, Ding-Dar Lee, Kai-Wei Liu, Chi-Yuan Yu, Yen-Jen Oyang, Huai-Kuang Tsai, Chien-Yu Chen:
De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae. Bioinform. 28(5): 701-708 (2012) - [j12]Chien-Hao Su, Tse-Yi Wang, Ming-Tsung Hsu, Francis Cheng-Hsuan Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai:
The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 619-628 (2012) - 2011
- [j11]Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Sufeng Chiang, Jen-Hao Cheng, Francis C. Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai:
MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering. Bioinform. 27(16): 2298-2299 (2011) - [j10]Tse-Yi Wang, Chien-Hao Su, Huai-Kuang Tsai:
MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions. Bioinform. 27(24): 3341-3347 (2011) - [c11]Zing Tsung-Yeh Tsai, Grace Tzu-Wei Huang, Huai-Kuang Tsai:
Simultaneous Identification for Synergistic Transcription Factors and their Transcription Factor Binding Sites. CISIS 2011: 547-552 - 2010
- [j9]Francis C. Weng, Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Huai-Kuang Tsai, Daryi Wang:
Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency. BMC Bioinform. 11: 565 (2010)
2000 – 2009
- 2008
- [j8]Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Yuh-Jyh Hu, Jinn-Moon Yang:
Evolutionary conservation of DNA-contact residues in DNA-binding domains. BMC Bioinform. 9(S-6) (2008) - 2007
- [j7]Huai-Kuang Tsai, Meng-Yuan Chou, Ching Hua Shih, Grace Tzu-Wei Huang, Tien-Hsien Chang, Wen-Hsiung Li:
MYBS: a comprehensive web server for mining transcription factor binding sites in yeast. Nucleic Acids Res. 35(Web-Server-Issue): 221-226 (2007) - [c10]Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Jinn-Moon Yang:
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains. IMSCCS 2007: 9-16 - 2006
- [j6]Huai-Kuang Tsai, Grace Tzu-Wei Huang, Meng-Yuan Chou, Henry Horng-Shing Lu, Wen-Hsiung Li:
Method for identifying transcription factor binding sites in yeast. Bioinform. 22(14): 1675-1681 (2006) - 2005
- [j5]East Zhao, Hsuan-Liang Liu, Chi-Hung Tsai, Huai-Kuang Tsai, Chen-hsiung Chan, Cheng-Yan Kao:
Cysteine separations profiles on protein sequences infer disulfide connectivity. Bioinform. 21(8): 1415-1420 (2005) - [c9]Chen-hsiung Chan, Sheng-An Lee, Cheng-Yan Kao, Huai-Kuang Tsai:
Improving EAX with restricted 2-opt. GECCO 2005: 1471-1476 - 2004
- [j4]Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao:
Some issues of designing genetic algorithms for traveling salesman problems. Soft Comput. 8(10): 689-697 (2004) - [j3]Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao:
An Evolutionary Approach for Gene Expression Patterns. IEEE Trans. Inf. Technol. Biomed. 8(2): 69-78 (2004) - [j2]Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fang Tsai, Cheng-Yan Kao:
An evolutionary algorithm for large traveling salesman problems. IEEE Trans. Syst. Man Cybern. Part B 34(4): 1718-1729 (2004) - [c8]Han-Yu Chuang, Huai-Kuang Tsai, Cheng-Yan Kao:
Optimal Designs for Microarray Experiments. ISPAN 2004: 619-624 - [c7]Hua-Sheng Chiu, Han-Yu Chuang, Huai-Kuang Tsai, Tao-Wei Huang, Cheng-Yan Kao:
Discovering Statistically Significant Clusters by Using Iterative Genetic Algorithms in Gene Expression Data. METMBS 2004: 243-249 - [c6]Chi-Hung Tsai, Huai-Kuang Tsai, Shih-Chieh Chen, Cheng-Yan Kao:
Disulfide Connectivity Prediction Using Support Vector Machine and Novel Features. METMBS 2004: 391-395 - [c5]Yu-Cheng Huang, Yu-Chih Chao, Shwu-Bin Lin, Huai-Kuang Tsai, Chun-Fan Chang, Sheng-An Lee, Cheng-Yan Kao:
A Tool to Determine the Specificity of Antisense Oligonucleotide. METMBS 2004: 447-449 - [c4]Yu-Cheng Huang, Han-Yu Chuang, Huai-Kuang Tsai, Chun-Fan Chang, Cheng-Yan Kao:
Designing Multiple-Use Primer Set for Multiplex PCR by Using Compact GAs. PPSN 2004: 511-521 - 2003
- [j1]Han-Yu Chuang, Huai-Kuang Tsai, Yuan-Fan Tsai, Cheng-Yan Kao:
Ranking Genes for Discriminability on Microarray Data. J. Inf. Sci. Eng. 19(6): 953-966 (2003) - 2002
- [c3]Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao:
Solving traveling salesman problems by combining global and local search mechanisms. IEEE Congress on Evolutionary Computation 2002: 1290-1295 - [c2]Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao:
Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data. GECCO 2002: 610-617 - 2000
- [c1]Huai-Kuang Tsai, Cheng-Yan Kao, Jinn-Moon Yang:
A Genetic Algorithm for Physical Mapping Problems. GECCO 2000: 375
Coauthor Index
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