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2020 – today
- 2023
[j14]Pierre Tufféry, Philippe Derreumaux:
A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution. Frontiers Bioinform. 3 (2023)- [j13]Julien Rey, Samuel Murail
, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. Nucleic Acids Res. 51(W1): 432-437 (2023) - 2020
- [j12]Huynh Minh Hung, Minh Tho Nguyen, Phuong-Thao Tran, Vi Khanh Truong, James Chapman, Le Huu Quynh Anh, Philippe Derreumaux, Van V. Vu, Son Tung Ngo:
Impact of the Astaxanthin, Betanin, and EGCG Compounds on Small Oligomers of Amyloid Aβ40 Peptide. J. Chem. Inf. Model. 60(3): 1399-1408 (2020)
2010 – 2019
- 2016
- [j11]Alexis Lamiable, Pierre Thévenet, Julien Rey, Marek Vavrusa, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. Nucleic Acids Res. 44(Webserver-Issue): W449-W454 (2016) - 2015
- [j10]Benoist Laurent, Matthieu Chavent, Tristan Cragnolini, Anna Caroline E. Dahl, Samuela Pasquali, Philippe Derreumaux, Mark S. P. Sansom, Marc Baaden:
Epock: rapid analysis of protein pocket dynamics. Bioinform. 31(9): 1478-1480 (2015) - 2014
- [c1]Sebastien Doutreligne, Tristan Cragnolini, Samuela Pasquali, Philippe Derreumaux, Marc Baaden:
UnityMol: Interactive scientific visualization for integrative biology. LDAV 2014: 109-110 - 2012
- [j9]Pierre Thévenet, Yimin Shen, Julien Maupetit, Frédéric Guyon, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides. Nucleic Acids Res. 40(Web-Server-Issue): 288-293 (2012) - 2011
- [j8]Jessica Nasica-Labouze, Massimiliano Meli, Philippe Derreumaux, Giorgio Colombo, Normand Mousseau:
A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35. PLoS Comput. Biol. 7(5) (2011) - 2010
- [j7]Julien Maupetit, Philippe Derreumaux, Pierre Tufféry:
A fast method for large-scale De Novo peptide and miniprotein structure prediction. J. Comput. Chem. 31(4): 726-738 (2010)
2000 – 2009
- 2009
- [j6]Julien Maupetit, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD: an online resource for de novo peptide structure prediction. Nucleic Acids Res. 37(Web-Server-Issue): 498-503 (2009) - 2005
- [j5]Pierre Tufféry, Frédéric Guyon, Philippe Derreumaux:
Improved greedy algorithm for protein structure reconstruction. J. Comput. Chem. 26(5): 506-513 (2005) - 2000
- [j4]Philippe Derreumaux:
Predicting helical hairpins from sequences by Monte Carlo simulations. J. Comput. Chem. 21(7): 582-589 (2000)
1990 – 1999
- 1995
- [j3]Manuel Dauchez, Philippe Derreumaux, Philippe Lagenat, Gérard Vergoten:
A Vibrational Molecular Force Field of Model Compounds with Biological Interest. IV. Parameters for the Different Glycosidic Linkages of Oligoaccharides. J. Comput. Chem. 16(2): 188-199 (1995) - 1994
- [j2]Philippe Derreumaux, Guihua Zhang, Tamar Schlick, Bernard R. Brooks:
A Truncated Newton Minimizer Adapted for CHARMM and Biomolecular Applications. J. Comput. Chem. 15(5): 532-552 (1994) - 1993
- [j1]Manuel Dauchez, Philippe Derreumaux, Gérard Vergoten:
Vibrational molecular force field of model compounds with biologic interest. II. Harmonic dynamics of both anomers of glucose in the crystalline state. J. Comput. Chem. 14(3): 263-277 (1993)
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