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2020 – today
- 2023
[c26]Shuhei Kimura, Hirotaka Kitajima, Masato Tokuhisa, Mariko Okada:
Inference of Genetic Networks from Steady-State and Pseudo Time-Series of Single-Cell Gene Expression Data using Modified Random Forests. SSCI 2023: 1579-1586- 2022
- [c25]Shuhei Kimura, Kazuki Sota, Masato Tokuhisa:
Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data. CIBCB 2022: 1-8 - 2021
- [c24]Shuhei Kimura, Takahiro Nozaki, Toshiyuki Murakami:
Admittance Control-based Bilateral Control System Considering Position Error. ICM 2021: 1-6 - [c23]Shuhei Kimura, Daichi Oda, Masato Tokuhisa:
Feature Selection using Modified Null Importance. SSCI 2021: 1-7 - 2020
- [c22]Shuhei Kimura, Masato Tokuhisa:
Detection of Weak Relevant Variables using Random Forests. SICE 2020: 838-845
2010 – 2019
- 2019
- [j9]Shuhei Kimura
, Masato Tokuhisa, Mariko Okada:
Inference of genetic networks using random forests: Assigning different weights for gene expression data. J. Bioinform. Comput. Biol. 17(4): 1950015:1-1950015:21 (2019) - [c21]Shuhei Kimura, Masato Tokuhisa, Akiyuki Uemura, Mariko Okada:
Feature Selection based on Random Forests and its Application to a Modeling of Sewage Treatment Plant. TAAI 2019: 1-6 - 2018
- [c20]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data. BIBE 2018: 98-103 - 2017
- [c19]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Inference of genetic networks from time-series of gene expression levels using random forests. CIBCB 2017: 1-6 - 2016
- [c18]Masato Tokuhisa, Yuuki Ishihara, Shuhei Kimura, Kenta Oku:
Recommending paragraphs of wikipedia pages as a travel guide. IWCIA 2016: 57-62 - [c17]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Simultaneous execution method of gene clustering and network inference. CIBCB 2016: 1-7 - 2015
- [j8]Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama:
An Effective Method for the Inference of Reduced S-system Models of Genetic Networks. Inf. Media Technol. 10(1): 166-174 (2015) - [c16]Shuhei Kimura, Mariko Okada-Hatakeyama:
Improvement of reliabilities of regulations using a hierarchical structure in a genetic network. IJCNN 2015: 1-7 - 2014
- [c15]Shuhei Kimura, Keisuke Hotta, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto:
Does return null matter? CSMR-WCRE 2014: 244-253 - 2013
- [c14]Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama:
Development of an efficient parameter estimation method for the inference of Vohradský's neural network models of genetic networks. IJCNN 2013: 1-6 - 2012
- [c13]Shuhei Kimura, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto:
Move code refactoring with dynamic analysis. ICSM 2012: 575-578 - [c12]Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama:
Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations. IJCNN 2012: 1-8 - 2011
- [j7]Saswati Dana, Takashi Nakakuki, Mariko Hatakeyama, Shuhei Kimura, Soumyendu Raha:
Computation of restoration of ligand response in the random kinetics of a prostate cancer cell signaling pathway. Comput. Methods Programs Biomed. 101(1): 1-22 (2011) - [c11]Shuhei Kimura, Koki Matsumura:
Constrained multimodal function optimization using a simple evolutionary algorithm. IEEE Congress on Evolutionary Computation 2011: 447-454 - 2010
- [j6]Yuichi Shiraishi, Shuhei Kimura, Mariko Okada:
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data. Bioinform. 26(8): 1073-1081 (2010) - [j5]Shuhei Kimura, Yuichi Shiraishi, Mariko Okada:
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations. J. Bioinform. Comput. Biol. 8(4): 661-677 (2010) - [c10]Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama:
Effective parameter estimation for S-system models using LPMs and evolutionary algorithms. IEEE Congress on Evolutionary Computation 2010: 1-8 - [c9]Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama:
Bootstrap Analysis of Genetic Networks inferred by the Method Using LPMs. ICCSA Workshops 2010: 296-299
2000 – 2009
- 2009
- [j4]Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama:
Genetic network inference as a series of discrimination tasks. Bioinform. 25(7): 918-925 (2009) - [c8]Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama:
Inference of genetic networks using linear programming machines: Application of a priori knowledge. IJCNN 2009: 1617-1624 - 2008
- [j3]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hideki Maeda, Koki Matsumura, Mariko Hatakeyama:
Function approximation approach to the inference of reduced NGnet models of genetic networks. BMC Bioinform. 9 (2008) - [c7]Shuhei Kimura, Koki Matsumura:
Density estimation using crossover kernels and its application to a real-coded genetic algorithm. IEEE Congress on Evolutionary Computation 2008: 694-701 - 2007
- [c6]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama:
Inference of Genetic Networks using a Reduced NGnet Model. IJCNN 2007: 932-937 - 2006
- [c5]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama:
Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks. IJCNN 2006: 2218-2225 - 2005
- [j2]Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya:
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinform. 21(7): 1154-1163 (2005) - [c4]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama:
Inference of genetic networks using neural network models. Congress on Evolutionary Computation 2005: 1738-1745 - [c3]Shuhei Kimura, Koki Matsumura:
Genetic algorithms using low-discrepancy sequences. GECCO 2005: 1341-1346 - 2004
- [j1]Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya:
OBIYagns: a grid-based biochemical simulator with a parameter estimator. Bioinform. 20(10): 1646-1648 (2004) - 2003
- [c2]Shuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya:
Inference of S-system models of genetic networks using a genetic local search. IEEE Congress on Evolutionary Computation 2003: 631-638 - [c1]Shuhei Kimura, Akihiko Konagaya:
High dimensional function optimization using a new genetic local search suitable for parallel computers. SMC 2003: 335-342
Coauthor Index
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