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ORCIDKatherine S. Pollard
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- affiliation: University of California San Francisco, Institute for Human Genetics, USA
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2020 – today
- 2023
[j19]Chunyu Zhao
, Boris Dimitrov, Miriam Goldman, Stephen Nayfach, Katherine S. Pollard:
MIDAS2: Metagenomic Intra-species Diversity Analysis System. Bioinform. 39(1) (2023)- 2022
- [j18]Byron J. Smith, Xiangpeng Li, Zhou Jason Shi, Adam R. Abate, Katherine S. Pollard:
Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts. Frontiers Bioinform. 2 (2022) - 2020
- [j17]Patrick H. Bradley, Katherine S. Pollard:
phylogenize: correcting for phylogeny reveals genes associated with microbial distributions. Bioinform. 36(4): 1289-1290 (2020)
2010 – 2019
- 2019
- [j16]Stephen Nayfach, Zhou Jason Shi, Rekha Seshadri, Katherine S. Pollard, Nikos Kyrpides:
New insights from uncultivated genomes of the global human gut microbiome. Nat. 568(7753): 505-510 (2019) - 2018
- [j15]Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard:
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization. PLoS Comput. Biol. 14(8) (2018) - 2017
- [j14]Reuben Thomas, Sean Thomas, Alisha K. Holloway, Katherine S. Pollard:
Features that define the best ChIP-seq peak calling algorithms. Briefings Bioinform. 18(3): 441-450 (2017) - [j13]Sophie Engle, Sean Whalen, Alark Joshi, Katherine S. Pollard:
Unboxing cluster heatmaps. BMC Bioinform. 18(S-2): 63:1-63:15 (2017) - 2015
- [j12]Stephen Nayfach, Michael A. Fischbach, Katherine S. Pollard:
MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinform. 31(20): 3368-3370 (2015) - [j11]Aram Avila-Herrera, Katherine S. Pollard:
Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species. BMC Bioinform. 16: 268:1-268:18 (2015) - [j10]Stephen Nayfach, Patrick H. Bradley, Stacia K. Wyman, Timothy J. Laurent, Alexander G. Williams, Jonathan A. Eisen, Katherine S. Pollard, Thomas J. Sharpton:
Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. PLoS Comput. Biol. 11(11) (2015) - 2014
- [j9]Genevieve D. Erwin, Nir Oksenberg, Rebecca M. Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv, Katherine S. Pollard, John A. Capra:
Integrating Diverse Datasets Improves Developmental Enhancer Prediction. PLoS Comput. Biol. 10(6) (2014) - 2012
- [j8]Danielle G. Lemay, William F. Martin, Angie S. Hinrichs, Monique Rijnkels, J. Bruce German, Ian Korf, Katherine S. Pollard:
G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes. BMC Bioinform. 13: 253 (2012) - [j7]Thomas J. Sharpton, Guillaume Jospin, Dongying Wu, Morgan G. I. Langille, Katherine S. Pollard, Jonathan A. Eisen:
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. BMC Bioinform. 13: 264 (2012) - [j6]John A. Capra, Alexander G. Williams, Katherine S. Pollard:
ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j5]Melissa J. Hubisz, Katherine S. Pollard, Adam C. Siepel:
PHAST and RPHAST: phylogenetic analysis with space/time models. Briefings Bioinform. 12(1): 41-51 (2011) - [j4]Thomas J. Sharpton, Samantha J. Riesenfeld, Steven W. Kembel, Joshua Ladau, James P. O'Dwyer, Jessica L. Green, Jonathan A. Eisen, Katherine S. Pollard:
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data. PLoS Comput. Biol. 7(1) (2011) - 2010
- [j3]Xusheng Wang, Richa Agarwala, John A. Capra, Zugen Chen, Deanna M. Church, Daniel C. Ciobanu, Zhengsheng Li, Lu Lu, Khyobeni Mozhui, Megan K. Mulligan, Stanley F. Nelson, Katherine S. Pollard, William Taylor, Donald B. Thomason, Robert W. Williams:
High-throughput sequencing of the DBA/2J mouse genome. BMC Bioinform. 11(S-4): O7 (2010)
2000 – 2009
- 2007
- [j2]Danielle G. Lemay, Margaret C. Neville, Michael Rudolph, Katherine S. Pollard, J. Bruce German:
Gene regulatory networks in lactation: identification of global principles using bioinformatics. BMC Syst. Biol. 1: 56 (2007) - 2006
- [j1]Kevin L. Schneider, Katherine S. Pollard, Robert Baertsch, Andy Pohl, Todd M. Lowe:
The UCSC Archaeal Genome Browser. Nucleic Acids Res. 34(Database-Issue): 407-410 (2006) - [c2]Adam C. Siepel, Katherine S. Pollard, David Haussler:
New Methods for Detecting Lineage-Specific Selection. RECOMB 2006: 190-205 - 2003
- [c1]Katherine S. Pollard, Mark J. van der Laan:
Multiple Testing for Gene Expression Data: An Investigation of Null Distributions with Consequences for the Permutation Test. METMBS 2003: 3-9
Coauthor Index
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