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ORCIDMacha Nikolski
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2020 – today
- 2023
[c6]Emmanuel Bouilhol, Edgar Lefevre, Thierno Barry, Florian Levet, Anne Beghin, Virgile Viasnoff, Xareni Galindo, Rémi Galland, Jean-Baptiste Sibarita, Macha Nikolski:
SalienceNet: An Unsupervised Image-to-Image Translation Method for Nuclei Saliency Enhancement in Microscopy Images. BIOIMAGING 2023: 41-51- 2022
- [j18]Edgar Lefevre, Emmanuel Bouilhol, Antoine Chauvière, Wilfried Souleyreau
, Marie-Alix Derieppe, Aurélien J. Trotier, Sylvain Miraux, Andreas Bikfalvi, Emeline J. Ribot, Macha Nikolski:
Deep learning model for automatic segmentation of lungs and pulmonary metastasis in small animal MR images. Frontiers Bioinform. 2 (2022) - [j17]Grigorii Sukhorukov, Maryam Khalili, Olivier Gascuel, Thierry Candresse, Armelle Marais-Colombel, Macha Nikolski:
VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data. Frontiers Bioinform. 2 (2022)
2010 – 2019
- 2015
- [j16]Mohammed El-Kebir, Hayssam Soueidan, Thomas Hume, Daniela Beisser, Marcus T. Dittrich, Tobias Müller, Guillaume Blin, Jaap Heringa, Macha Nikolski, Lodewyk F. A. Wessels, Gunnar W. Klau:
xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model. Bioinform. 31(19): 3147-3155 (2015) - [c5]Anita Burgun, Dina V. Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, Iain E. Buchan, Tjeerd Pieter van Staa, James A. Cunningham, Marianne L. Gjerstorff, Jean-Charles Dufour, Jean-François Gibrat, Macha Nikolski, Pierre Verger, Anne Cambon-Thomsen, Cristina Masella, Emanuele Lettieri, Paolo Bertele, Marjut Salokannel, Rodolphe Thiébaut, Charles Persoz, Geneviève Chêne, Christian Ohmann:
Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). MedInfo 2015: 1005 - [c4]Thomas Hume, Hayssam Soueidan, Macha Nikolski, Guillaume Blin:
Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem. SOFSEM 2015: 242-253 - 2014
- [j15]Daniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente:
Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinform. 30(1): 17-23 (2014) - 2013
- [j14]Hayssam Soueidan, Florence Maurier, Alexis Groppi, Pascal Sirand-Pugnet, Florence Tardy, Christine Citti, Virginie Dupuy, Macha Nikolski:
Finishing bacterial genome assemblies with Mix. BMC Bioinform. 14(S-15): S16 (2013) - [j13]Anasua Sarkar, Macha Nikolski, Pascal Durrens:
The family based variability in protein family expansion. Int. J. Bioinform. Res. Appl. 9(2): 121-133 (2013) - 2011
- [j12]Anasua Sarkar, Hayssam Soueidan, Macha Nikolski:
Identification of conserved gene clusters in multiple genomes based on synteny and homology. BMC Bioinform. 12(S-9): S18 (2011) - [j11]Géraldine Jean, Macha Nikolski:
SyDiG: uncovering Synteny in Distant Genomes. Int. J. Bioinform. Res. Appl. 7(1): 43-62 (2011) - [j10]Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011)
2000 – 2009
- 2009
- [b1]Macha Nikolski:
From Genomic to Functional models. University of Bordeaux, France, 2009 - [j9]Macha Nikolski, David James Sherman:
Family relationships: should consensus reign? - consensus clustering for protein families. Bioinform. 25(17): 2294 (2009) - [j8]Géraldine Jean, David James Sherman, Macha Nikolski:
Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures. J. Comput. Biol. 16(9): 1267-1284 (2009) - [j7]David James Sherman, Tiphaine C. Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, Pascal Durrens:
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. Nucleic Acids Res. 37(Database-Issue): 550-554 (2009) - [c3]Hayssam Soueidan, Grégoire Sutre, Macha Nikolski:
Qualitative Transition Systems for the Abstraction and Comparison of Transient Behavior in Parametrized Dynamic Models. CMSB 2009: 313-327 - [c2]Nikolay Vyahhi, Adrien Goëffon, Macha Nikolski, David James Sherman:
Swarming along the evolutionary branches sheds light on genome rearrangement scenarios. GECCO 2009: 241-246 - 2008
- [j6]Pascal Durrens, Macha Nikolski, David James Sherman:
Fusion and Fission of Genes Define a Metric between Fungal Genomes. PLoS Comput. Biol. 4(10) (2008) - [c1]Adrien Goëffon, Macha Nikolski, David James Sherman:
An efficient probabilistic population-based descent for the median genome problem. GECCO 2008: 315-322 - 2007
- [j5]Macha Nikolski, David James Sherman:
Family relationships: should consensus reign? - consensus clustering for protein families. Bioinform. 23(2): 71-76 (2007) - [j4]Géraldine Jean, Macha Nikolski:
Genome rearrangements: a correct algorithm for optimal capping. Inf. Process. Lett. 104(1): 14-20 (2007) - 2006
- [j3]David James Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, Jean-Luc Souciet:
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. Nucleic Acids Res. 34(Database-Issue): 432-435 (2006) - 2005
- [j2]Florian Iragne, Macha Nikolski, Bertrand Mathieu, David Auber, David James Sherman:
ProViz: protein interaction visualization and exploration. Bioinform. 21(2): 272-274 (2005) - 2004
- [j1]David James Sherman, Pascal Durrens, Emmanuelle Beyne, Macha Nikolski:
Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts. Nucleic Acids Res. 32(Database-Issue): 315-318 (2004)
Coauthor Index
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