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ORCIDDesmond G. Higgins
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2020 – today
- 2020
[j39]Fabian Sievers, Desmond G. Higgins:
QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction. Bioinform. 36(1): 90-95 (2020)
2010 – 2019
- 2017
- [j38]Quan Le, Fabian Sievers, Desmond G. Higgins:
Protein multiple sequence alignment benchmarking through secondary structure prediction. Bioinform. 33(9): 1331-1337 (2017) - 2016
- [j37]Gearoid Fox, Fabian Sievers, Desmond G. Higgins:
Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments. Bioinform. 32(6): 814-820 (2016) - [j36]Peter Jehl, Jean Manguy
, Denis C. Shields, Desmond G. Higgins, Norman E. Davey:
ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequences. Nucleic Acids Res. 44(Webserver-Issue): W11-W15 (2016) - 2015
- [j35]Kieran Boyce, Fabian Sievers, Desmond G. Higgins:
Instability in progressive multiple sequence alignment algorithms. Algorithms Mol. Biol. 10: 26 (2015) - [j34]Peter Jehl, Fabian Sievers, Desmond G. Higgins:
OD-seq: outlier detection in multiple sequence alignments. BMC Bioinform. 16: 269:1-269:11 (2015) - 2014
- [j33]Fabian Sievers, Graham M. Hughes, Desmond G. Higgins:
Systematic exploration of guide-tree topology effects for small protein alignments. BMC Bioinform. 15: 338 (2014) - [j32]Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov:
GWIPS-viz: development of a ribo-seq genome browser. Nucleic Acids Res. 42(Database-Issue): 859-864 (2014) - 2013
- [j31]Fabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins:
Making automated multiple alignments of very large numbers of protein sequences. Bioinform. 29(8): 989-995 (2013) - 2010
- [j30]Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G. Higgins:
Sequence embedding for fast construction of guide trees for multiple sequence alignment. Algorithms Mol. Biol. 5: 21 (2010) - [j29]Stephen F. Madden, Susan B. Carpenter, Ian B. Jeffery, Harry Björkbacka, Katherine A. Fitzgerald, Luke A. O'Neill, Desmond G. Higgins:
Detecting microRNA activity from gene expression data. BMC Bioinform. 11: 257 (2010)
2000 – 2009
- 2008
- [j28]Gordon Blackshields, Mark A. Larkin, Iain M. Wallace, Andreas Wilm, Desmond G. Higgins:
Fast embedding methods for clustering tens of thousands of sequences. Comput. Biol. Chem. 32(4): 282-286 (2008) - [j27]Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas:
Distinct Patterns in the Regulation and Evolution of Human Cancer Genes. Silico Biol. 8(1): 33-46 (2008) - [j26]Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame:
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 10-13 (2008) - 2007
- [j25]Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins:
Integrating transcription factor binding site information with gene expression datasets. Bioinform. 23(3): 298-305 (2007) - [j24]Mark A. Larkin, Gordon Blackshields, Nigel P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins:
Clustal W and Clustal X version 2.0. Bioinform. 23(21): 2947-2948 (2007) - [j23]Iain M. Wallace, Desmond G. Higgins:
Supervised multivariate analysis of sequence groups to identify specificity determining residues. BMC Bioinform. 8 (2007) - [j22]Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame:
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35(Web-Server-Issue): 645-648 (2007) - 2006
- [j21]Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame:
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Bioinform. 22(19): 2439-2440 (2006) - [j20]Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane:
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinform. 7: 359 (2006) - [j19]Gordon Blackshields, Iain M. Wallace, Mark A. Larkin, Desmond G. Higgins:
Analysis and Comparison of Benchmarks for Multiple Sequence Alignment. Silico Biol. 6(4): 321-339 (2006) - 2005
- [j18]Iain M. Wallace, Orla O'Sullivan, Desmond G. Higgins:
Evaluation of iterative alignment algorithms for multiple alignment. Bioinform. 21(8): 1408-1414 (2005) - [j17]Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins:
MADE4: an R package for multivariate analysis of gene expression data. Bioinform. 21(11): 2789-2790 (2005) - 2003
- [j16]Aedín C. Culhane, Guy Perrière, Desmond G. Higgins:
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinform. 4: 59 (2003) - [j15]Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson:
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31(13): 3497-3500 (2003) - [c2]Steven D. Prestwich, Desmond G. Higgins, Orla O'Sullivan:
A SAT-Based Approach to Multiple Sequence Alignment. CP 2003: 940-944 - [c1]Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurélien Grosdidier, Cédric Notredame:
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. ISMB (Supplement of Bioinformatics) 2003: 215-221 - 2002
- [j14]Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins:
Between-group analysis of microarray data. Bioinform. 18(12): 1600-1608 (2002)
1990 – 1999
- 1999
- [j13]Patricia Thébault, Pierre Monestie, Annette McGrath, Desmond G. Higgins:
MIAH: automatic alignment of eukaryotic SSU rRNAs. Bioinform. 15(4): 341-342 (1999) - 1998
- [j12]Emmet A. O'Brien, Cédric Notredame, Desmond G. Higgins:
Optimization of ribosomal RNA profile alignments. Bioinform. 14(4): 332-341 (1998) - [j11]Cédric Notredame, Liisa Holm, Desmond G. Higgins:
COFFEE: an objective function for multiple sequence alignments. Bioinform. 14(5): 407-422 (1998) - [j10]Emmet A. O'Brien, Desmond G. Higgins:
Empirical estimation of the reliability of ribosomal RNA alignments. Bioinform. 14(10): 830-838 (1998) - 1994
- [j9]Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson:
Improved sensitivity of profile searches through the use of sequence weights and gap excision. Comput. Appl. Biosci. 10(1): 19-29 (1994) - 1993
- [j8]Catherine M. Rice, Rainer Fuchs, Desmond G. Higgins, Peter Stoehr, Graham Cameron:
The EMBL data library. Nucleic Acids Res. 21(13): 2967-2971 (1993) - 1992
- [j7]Desmond G. Higgins:
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets. Comput. Appl. Biosci. 8(1): 15-22 (1992) - [j6]Desmond G. Higgins, Peter Stoehr:
EMBLSCAN: fast approximate DNA database searches on compact disc. Comput. Appl. Biosci. 8(2): 137-139 (1992) - [j5]Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs:
CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8(2): 189-191 (1992) - [j4]Denis C. Shields, Desmond G. Higgins, P. M. Sharp:
GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. Comput. Appl. Biosci. 8(5): 521-523 (1992) - [j3]Jaap Heringa, Hubert Sommerfeldt, Desmond G. Higgins, Patrick Argos:
OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity. Comput. Appl. Biosci. 8(6): 599-600 (1992)
1980 – 1989
- 1989
- [j2]Desmond G. Higgins, P. M. Sharp:
Fast and sensitive multiple sequence alignments on a microcomputer. Comput. Appl. Biosci. 5(2): 151-153 (1989) - 1987
- [j1]Desmond G. Higgins, Manolo Gouy:
Interfacing similarity search software with the sequence retrieval system ACNUC. Comput. Appl. Biosci. 3(3): 239-241 (1987)
Coauthor Index
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