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ORCIDInternational Journal of Bioinformatics Research and Applications (IJBRA), Volume 5
Volume 5, Number 1, 2009
- Jamal Alhiyafi
, Cavitha Sabesan, Shiyong Lu, Jeffrey L. Ram:
RECOMBFLOW: a scientific workflow environment for Intragenomic Gene Conversion analysis in bacterial genomes, including the pathogen Streptococcus pyogenes. 1-19 - Abdur R. Sikder, Albert Y. Zomaya:
Analysis of protein phosphorylation site predictors with an independent dataset. 20-37 - Jingli Wu, Jianxin Wang, Jianer Chen:
A practical algorithm for multiplex PCR primer set selection. 38-49 - Fang-Xiang Wu, Zhonghang Xia, Lei Mu:
Finding Significantly Expressed genes from time-course expression profiles. 50-63 - Ovidiu Daescu, Jun Luo:
Stabbing balls and simplifying proteins. 64-80 - Israel Mark Martínez-Pérez, Karl-Heinz Zimmermann, Zoya Ignatova:
An autonomous DNA model for finite state automata. 81-96 - Joong Chae Na, Kangho Roh, Alberto Apostolico, Kunsoo Park:
Alignment of biological sequences with quality scores. 97-113
Volume 5, Number 2, 2009
- Alain Goriely, Sebastien Neukirch, Andrew Hausrath:
Polyhelices through n points. 118-132 - Manoelito C. Dos Santos Jr., Alex G. Taranto, Sandra A. De Assis, Aristóteles Góes-Neto:
Homology modelling of pyrophosphosrylase, enzyme involved in chitin pathway of Moniliophthora perniciosa. 133-153 - Ana Luiza Vivan, Rafael A. Caceres, Luiz Augusto Basso, Diógenes Santiago Santos, Walter F. de Azevedo Jr.:
Structural studies of PNP from Toxoplasma gondii. 154-162 - Gerardo Valdisio R. Viana, Fernando A. C. Gomes, Carlos E. Ferreira, Cláudio Nogueira de Meneses:
Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem. 163-177 - Renata C. Ferreira, Francisco Bosco, Marcelo R. S. Briones:
Scaling properties of transcription profiles in gene networks. 178-186 - Ya-Ju Fan, Wanpracha Art Chaovalitwongse, Chang-Chia Liu, Rajesh C. Sachdeo, Leonidas D. Iasemidis, Panos M. Pardalos:
Optimisation and data mining techniques for the screening of epileptic patients. 187-196 - Rubem P. Mondaini:
Modelling biomolecular structure with geodesic curves through ordered sets of atom sites. 197-206 - Selma T. Milagre, Carlos Dias Maciel, Jose Carlos Pereira, Adriano Alves Pereira:
Fuzzy cluster stability analysis with missing values using resampling. 207-223 - Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu:
Correcting short reads with high error rates for improved sequencing result. 224-237
Volume 5, Number 3, 2009
- Mitchell Koch, Bradley M. Broom, Devika Subramanian:
Learning robust cell signalling models from high throughput proteomic data. 241-253 - Xinye Cai, Praveen Koduru, Sanjoy Das, Stephen M. Welch:
Simultaneous structure discovery and parameter estimation in gene networks using a multi-objective GP-PSO hybrid approach. 254-268 - Shuxing Zhang, Lei Du-Cuny:
Development and evaluation of a new statistical model for structure-based high-throughput virtual screening. 269-279 - William L. Duax, Robert Huether, Vladimir Pletnev, Timothy C. Umland, Charles M. Weeks:
Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor. 280-294 - Stephen O. Opiyo, Etsuko N. Moriyama:
Mining the Arabidopsis and rice genomes for cyclophilin protein families. 295-309 - Rosy Das, Jugal K. Kalita, Dhruba Kumar Bhattacharyya:
A new approach for clustering gene expression time series data. 310-328 - Raja Loganantharaj:
Beyond clustering of array expressions. 329-348 - Hyrum Carroll, Adam R. Teichert, Jonathan Krein, Kenneth Sundberg, Quinn Snell, Mark J. Clement:
An open source phylogenetic search and alignment package. 349-364
Volume 5, Number 4, 2009
- Hao Wang, Zhao Xu:
Identification of LTR retrotransposons in eukaryotic genomes: supports from structure and evolution. 365-377 - Wei Chen, Liaofu Luo, Lirong Zhang, Hao Lin:
Recognition of DNase I hypersensitive sites in multiple cell lines. 378-384 - Sérgio A. D. Deusdado, Paulo Carvalho:
GRASPm: an efficient algorithm for exact pattern-matching in genomic sequences. 385-401 - Cristian R. Munteanu, Alexandre Magalhães:
Prot-2S: a new python web tool for protein secondary structure studies. 402-416 - Vijayan Vinaya, Nadeem Bulsara, Chetan J. Gadgil, Mugdha Gadgil:
Comparison of feature selection and classification combinations for cancer classification using microarray data. 417-431 - Rafal Pokrzywa:
Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences. 432-446 - Julio Vera, Taesoo Kwon, Ulf Schmitz, Walter Kolch, Olaf Wolkenhauer:
Exploration of homodimer receptor: homodimer protein interactions. 447-457 - Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky:
Frameshift detection in prokaryotic genomic sequences. 458-477
Volume 5, Number 5, 2009
- Virendra S. Gomase, Akshay N. Parundekar:
microRNA: human disease and development. 479-500 - Nashat Mansour, Christine Kehyayan, Hassan Khachfe:
Scatter Search algorithm for Protein Structure Prediction. 501-515 - Krishnankutty C. Sivakumar, Biju Thomas, Devarajan Karunagaran:
Three dimensional structure of the closed conformation (active) of human merlin reveals masking of actin binding site in the FERM domain. 516-524 - Ashutosh Kumar, Shuchi Smita, Neeti Sahu, Vivekanand Sharma, Shankaracharya, Ambarish Sharan Vidyarthi, Dev Mani Pandey:
In silico analysis of motifs in promoters of Differentially Expressed Genes in rice (Oryza sativa L.) under anoxia. 525-547 - Virendra S. Gomase, Somnath Tagore:
Phylogenomics: evolution and genomics intersection. 548-563 - Peyman Najmabadi, Hans He Lee, Tony Aung, Aung Thuya, Julio Ng, James J. La Clair, Michael D. Burkart:
Grafta: A 3D environment for biomolecular networks. 564-569 - Susmita Sur-Kolay, Satyajit Banerjee, Srabani Mukhopadhyaya, C. A. Murthy:
The Double Digest Problem: finding all solutions. 570-592
Volume 5, Number 6, 2009
- Taysir Hassan A. Soliman, Tarek F. Gharib, Alshaimaa Abo-Alian, Mohammed Alsharkawy:
A Lossless Compression Algorithm for DNA sequences. 593-602 - Viral Vadwai, Shine Devaraj:
Insilico analysis of homocamptothecin (hCPT) analogues for anti-tumour activity. 603-615 - Raju Poddar, Aprajita Mathur, Omkar Uday Kawalekar, Amit Rai, Amogh Bhatnagar:
Modifications of ampicillin structure and its implication: an in-silico approach. 616-624 - Ting Chen, Feng Li:
Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. 625-646 - Pokkuluri Kiran Sree, Inampudi Ramesh Babu, N. S. S. S. N. Usha Devi:
Investigating an Artificial Immune System to strengthen protein structure prediction and protein coding region identification using the Cellular Automata classifier. 647-662 - Ganiraju Manyam, Ancha V. Baranova, Mikhail Skoblov, Rakesh K. Mishra:
SnS-Align: a graphic tool for alignment of distantly related proteins. 663-673 - Virendra S. Gomase, Aravind K. Tripathi, Somnath Tagore:
Cellunomics: the interaction analysis of cells. 674-690
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