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ORCIDJournal of Integrative Bioinformatics, Volume 20
Volume 20, Number 1, March 2023
- Akihiko Konagaya
, Gregory Gutmann, Yuhui Zhang:
Co-creation environment with cloud virtual reality and real-time artificial intelligence toward the design of molecular robots. - Bassam Abdo Al-Hameli, Abdulrahman Ahmad Al-Sewari, Shadi Saleh Basurra, Jagdev Bhogal, Mohammed A. H. Ali:
Diabetes disease prediction system using HNB classifier based on discretization method. - Savas Takan, Jens Allmer:
Community-wide collaboration is a must to reinstall trust in bioinformatics solutions and biomedical interpretation. - Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. - Frontmatter. i-ii
- Lukas Buecherl, Thomas Mitchell, James Scott-Brown, Prashant Vaidyanathan, Gonzalo Vidal, Hasan Baig, Bryan Bartley, Jacob Beal, Matthew Crowther, Pedro Fontanarrosa, Thomas E. Gorochowski, Raik Grünberg, Vishwesh Kulkarni, James Alastair McLaughlin, Göksel Misirli, Ernst Oberortner, Anil Wipat, Chris J. Myers:
Synthetic biology open language (SBOL) version 3.1.0. - Michael Clerx, Michael T. Cooling, Jonathan Cooper, Alan Garny, Keri R. Moyle, David P. Nickerson, Poul M. F. Nielsen, Hugh Sorby:
CellML 2.0.1. - James C. Schaff, Anuradha Lakshminarayana, Robert F. Murphy, Frank T. Bergmann, Akira Funahashi, Devin P. Sullivan, Lucian P. Smith:
SBML level 3 package: spatial processes, version 1, release 1.
Volume 20, Number 2, July 2023
- Nicolò Casano, Silvano Junior Santini, Pierpaolo Vittorini, Gaia Sinatti, Paolo Carducci, Claudio Maria Mastroianni, Maria Rosa Ciardi, Patrizia Pasculli, Emiliano Petrucci, Franco Marinangeli, Clara Balsano:
Application of machine learning approach in emergency department to support clinical decision making for SARS-CoV-2 infected patients. - André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira:
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3. - Carlos A. C. Bastos, Vera Afreixo, João M. O. S. Rodrigues, Armando J. Pinho:
Concentration of inverted repeats along human DNA. - Hamed Ghazikhani, Gregory Butler:
Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks. - Frontmatter. i-ii
- Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva:
Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target. - Ahmad Muhaimin Ismail, Muhammad Akmal bin Remli, Yee Wen Choon, Nurul Athirah Nasarudin, Nor Syahidatul Nadiah Binti Ismail, Mohd Arfian Ismail, Mohd Saberi Mohamad:
Artificial Bee Colony algorithm in estimating kinetic parameters for yeast fermentation pathway. - Thomas Papastergiou, Jérôme Azé, Sandra Bringay, Maxime Louet, Pascal Poncelet, Miyanou Rosales-Hurtado, Yen Vo-Hoang, Patricia Licznar-Fajardo, Jean-Denis Docquier, Laurent Gavara:
Discovering NDM-1 inhibitors using molecular substructure embeddings representations.
Volume 20, Number 3, December 2024
- Andrea Marino, Blerina Sinaimeri, Enrico Tronci, Tiziana Calamoneri:
STARGATE-X: a Python package for statistical analysis on the REACTOME network. - Jaroslav Budis, Werner Krampl, Marcel Kucharík, Rastislav Hekel, Adrián Goga, Jozef Sitarcík, Michal Lichvár, David Smolak, Miroslav Böhmer, Andrej Baláz, Frantisek Duris, Juraj Gazdarica, Katarina Soltys, Ján Turna, Ján Radvánszky, Tomás Szemes:
SnakeLines: integrated set of computational pipelines for sequencing reads. - Yuriy L. Orlov, Ming Chen, Nikolay A. Kolchanov, Ralf Hofestädt:
BGRS: bioinformatics of genome regulation and data integration. - Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek:
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. - Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko:
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. - Frontmatter. i-ii
- John Anders, Peter F. Stadler:
RNAcode_Web - Convenient identification of evolutionary conserved protein coding regions. - Grigory A. Oborotov, Konstantin Koshechkin, Yuriy L. Orlov:
Application of Artificial Intelligence or machine learning in risk sharing agreements for pharmacotherapy risk management.
Volume 20, Number 4, January 2024
- Frontmatter. i-ii
- Katharina Wolff, Ronja Friedhoff, Friderieke Schwarzer, Boas Pucker:
Data literacy in genome research. - Jing Chen, Zixiang Wang, Jia Huang:
SAMNA: accurate alignment of multiple biological networks based on simulated annealing. - Haoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov, Ming Chen:
Integrating omics databases for enhanced crop breeding. - Marco Zurdo-Tabernero, Angel Canal-Alonso, Fernando de la Prieta, Sara Rodríguez, Javier Prieto, Juan Manuel Corchado:
An overview of machine learning and deep learning techniques for predicting epileptic seizures. - Lena Raupach, Cassandra Königs:
PharmoCo: a graph-based visualization of pharmacogenomic plausibility check reports for clinical decision support systems. - Andreas Ian Lackner, Jürgen Pollheimer, Paulina Latos, Martin Knöfler, Sandra Haider:
Gene-network based analysis of human placental trophoblast subtypes identifies critical genes as potential targets of therapeutic drugs.
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