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ORCIDSteven J. Hallam
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- affiliation: University of British Columbia, Vancouver, Canada
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2020 – today
- 2022
[c8]Abdur Rahman Mohd Abul Basher, Steven J. Hallam:
Aggregating Statistically Correlated Metabolic Pathways Into Groups to Improve Prediction Performance. BIOINFORMATICS 2022: 49-61- 2021
- [j11]Sarah E. I. Perez, Aria S. Hahn
, Martin Krzywinski, Steven J. Hallam:
Hive Panel Explorer: an interactive network visualization tool. Bioinform. 37(3): 436-437 (2021) - [j10]Abdur Rahman Mohd Abul Basher, Steven J. Hallam:
Leveraging heterogeneous network embedding for metabolic pathway prediction. Bioinform. 37(6): 822-829 (2021) - [j9]Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin, Steven J. Hallam:
Metabolic Pathway Prediction Using Non-Negative Matrix Factorization with Improved Precision. J. Comput. Biol. 28(11): 1075-1103 (2021) - [j8]Kimberly A. Dill-McFarland, Stephan G. König, Florent Mazel, David C. Oliver, Lisa M. McEwen, Kris Y. Hong, Steven J. Hallam:
An integrated, modular approach to data science education in microbiology. PLoS Comput. Biol. 17(2) (2021) - [c7]Abdur Rahman Mohd Abul Basher, Steven J. Hallam:
Relabeling Metabolic Pathway Data with Groups to Improve Prediction Outcomes. ICCABS 2021: 38-50 - 2020
- [j7]Connor Morgan-Lang, Ryan J. McLaughlin, Zachary Armstrong, Grace Zhang, Kevin Chan, Steven J. Hallam:
TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. Bioinform. 36(18): 4706-4713 (2020) - [j6]Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin, Steven J. Hallam:
Metabolic pathway inference using multi-label classification with rich pathway features. PLoS Comput. Biol. 16(10) (2020) - [c6]Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin, Steven J. Hallam:
Metabolic Pathway Prediction using Non-negative Matrix Factorization with Improved Precision. ICCABS 2020: 33-44
2010 – 2019
- 2017
- [j5]David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides:
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45(Database-Issue): D457-D465 (2017) - 2016
- [j4]Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes. Bioinform. 32(23): 3535-3542 (2016) - [c5]Dongjae Kim, Aria S. Hahn, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
FAST: Fast annotation with synchronized threads. CIBCB 2016: 1-8 - 2015
- [j3]Kishori M. Konwar, Niels W. Hanson, Maya P. Bhatia, Dongjae Kim, Shang-Ju Wu, Aria S. Hahn, Connor Morgan-Lang, Hiu Kan Cheung, Steven J. Hallam:
MetaPathways v2.5: quantitative functional, taxonomic and usability improvements. Bioinform. 31(20): 3345-3347 (2015) - [c4]Aria S. Hahn, Niels W. Hanson, Dongjae Kim, Kishori M. Konwar, Steven J. Hallam:
Assembly independent functional annotation of short-read data using SOFA: Short-ORF functional annotation. CIBCB 2015: 1-6 - [c3]Dongjae Kim, Aria S. Hahn, Shang-Ju Wu, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
FragGeneScan-plus for scalable high-throughput short-read open reading frame prediction. CIBCB 2015: 1-8 - 2014
- [c2]Niels W. Hanson, Kishori M. Konwar, Shang-Ju Wu, Steven J. Hallam:
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds. CIBCB 2014: 1-7 - 2013
- [j2]Kishori M. Konwar, Niels W. Hanson, Antoine P. Pagé, Steven J. Hallam:
MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information. BMC Bioinform. 14: 202 (2013) - [j1]W. Evan Durno, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
Expanding the boundaries of local similarity analysis. BMC Genom. 14(S-1): S3 (2013) - [c1]Inna Rytsareva, Ananth Kalyanaraman, Kishori M. Konwar, Steven J. Hallam:
Scalable heuristics for clustering biological graphs. ICCABS 2013: 1-6
Coauthor Index
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