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ORCIDZhen-Ling Peng
Person information
- affiliation: Shandong University, Research Center for Mathematics and Interdisciplinary Sciences, Qingdao, China
- affiliation (former): Tianjin University, Center for Applied Mathematics, China
- affiliation (PhD 2014): University of Alberta, Department of Electrical and Computer Engineering, Edmonton, AB, Canada
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2020 – today
- 2024
[j24]Zongyang Du, Zhenling Peng
, Jianyi Yang:
RNA threading with secondary structure and sequence profile. Bioinform. 40(2) (2024)- [j23]Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang:
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions. Genom. Proteom. Bioinform. 22(1) (2024) - 2023
- [j22]Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao, Lukasz A. Kurgan:
CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information. Briefings Bioinform. 24(1) (2023) - [j21]Kun Zhu, Hong Su, Zhenling Peng, Jianyi Yang:
A unified approach to protein domain parsing with inter-residue distance matrix. Bioinform. 39(2) (2023) - [j20]Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023) - 2022
- [j19]Zongyang Du, Zhenling Peng, Jianyi Yang:
Toward the assessment of predicted inter-residue distance. Bioinform. 38(4): 962-969 (2022) - [j18]Wenkai Wang, Zhenling Peng, Jianyi Yang:
Single-sequence protein structure prediction using supervised transformer protein language models. Nat. Comput. Sci. 2(12): 804-814 (2022) - [j17]Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang:
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 569-574 (2022) - 2021
- [j16]Hong Su, Zhenling Peng, Jianyi Yang:
Recognition of small molecule-RNA binding sites using RNA sequence and structure. Bioinform. 37(1): 36-42 (2021) - [j15]Saisai Sun, Wenkai Wang, Zhenling Peng, Jianyi Yang:
RNA inter-nucleotide 3D closeness prediction by deep residual neural networks. Bioinform. 37(8): 1093-1098 (2021) - [j14]Lisha Ye, Peikun Wu, Zhenling Peng, Jianzhao Gao, Jian Liu, Jianyi Yang:
Improved estimation of model quality using predicted inter-residue distance. Bioinform. 37(21): 3752-3759 (2021) - 2020
- [j13]Qi Wu, Zhenling Peng, Ivan Anishchenko, Qian Cong, David Baker, Jianyi Yang:
Protein contact prediction using metagenome sequence data and residual neural networks. Bioinform. 36(1): 41-48 (2020) - [j12]Zongyang Du, Shuo Pan, Qi Wu, Zhenling Peng, Jianyi Yang:
CATHER: a novel threading algorithm with predicted contacts. Bioinform. 36(7): 2119-2125 (2020)
2010 – 2019
- 2019
- [j11]Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang:
Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods. Bioinform. 35(6): 930-936 (2019) - [j10]Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang:
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles. Bioinform. 35(10): 1686-1691 (2019) - 2018
- [j9]Qiqige Wuyun, Wei Zheng, Zhenling Peng, Jianyi Yang:
A large-scale comparative assessment of methods for residue-residue contact prediction. Briefings Bioinform. 19(2): 219-230 (2018) - [j8]Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang:
mTM-align: an algorithm for fast and accurate multiple protein structure alignment. Bioinform. 34(10): 1719-1725 (2018) - [j7]Qiaozhen Meng, Zhenling Peng, Jianyi Yang:
CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction. Bioinform. 34(15): 2598-2604 (2018) - [j6]Zijuan Zhao, Zhenling Peng, Jianyi Yang:
Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method. J. Chem. Inf. Model. 58(7): 1459-1468 (2018) - [j5]Runze Dong, Shuo Pan, Zhenling Peng, Yang Zhang, Jianyi Yang:
mTM-align: a server for fast protein structure database search and multiple protein structure alignment. Nucleic Acids Res. 46(Webserver-Issue): W380-W386 (2018) - [j4]Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang:
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. Nucleic Acids Res. 46(Webserver-Issue): W438-W442 (2018) - 2017
- [j3]Jiaqi Xia, Zhenling Peng, Dawei Qi, Hongbo Mu, Jianyi Yang:
An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier. Bioinform. 33(6): 863-870 (2017) - 2012
- [c1]Zhenling Peng, Lukasz A. Kurgan:
On the Complementarity of the Consensus-Based Disorder Prediction. Pacific Symposium on Biocomputing 2012: 176-187 - 2010
- [j2]Jianyi Yang, Zhen-Ling Peng, Xin Chen:
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure. BMC Bioinform. 11(S-1): 9 (2010) - [j1]Zhen-Ling Peng, Jianyi Yang, Xin Chen:
An improved classification of G-protein-coupled receptors using sequence-derived features. BMC Bioinform. 11: 420 (2010)
Coauthor Index
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