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ORCIDMikel Hernaez
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2020 – today
- 2024
[c13]Daniel Naro
, Jaime Delgado, Silvia Llorente, Mikel Hernaez:
Use of Beacon v2 for Improving Genomics Based Research in a Clinical Setting. MIE 2024: 1243-1247- 2023
- [i3]Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez:
Towards a more inductive world for drug repurposing approaches. CoRR abs/2311.12670 (2023) - 2021
- [j23]Mikel Hernaez:
Towards scalable genomic data access. Nat. Comput. Sci. 1(6): 391-392 (2021) - [j22]Jan Voges, Mikel Hernaez, Marco Mattavelli, Jörn Ostermann:
An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data. Proc. IEEE 109(9): 1607-1622 (2021) - 2020
- [j21]Mikel Hernaez, Charles Blatti, Olivier Gevaert:
Comparison of single and module-based methods for modeling gene regulatory networks. Bioinform. 36(2): 558-567 (2020) - [j20]Jan Voges, Tom Paridaens, Fabian Müntefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier, Jörn Ostermann, Mikel Hernaez:
GABAC: an arithmetic coding solution for genomic data. Bioinform. 36(7): 2275-2277 (2020) - [j19]Qingxi Meng, Idoia Ochoa, Mikel Hernaez:
GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form. Bioinform. 36(18): 4810-4812 (2020) - [j18]Albert No, Mikel Hernaez, Idoia Ochoa:
CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores. J. Bioinform. Comput. Biol. 18(6): 2050031:1-2050031:22 (2020)
2010 – 2019
- 2019
- [j17]Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman:
SPRING: a next-generation compressor for FASTQ data. Bioinform. 35(15): 2674-2676 (2019) - [c12]Idoia Ochoa, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez:
AliCo: A New Efficient Representation for SAM Files. DCC 2019: 93-102 - 2018
- [j16]Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman:
QVZ: lossy compression of quality values. Bioinform. 34(1): 179 (2018) - [j15]Jan Voges, Jörn Ostermann, Mikel Hernaez:
CALQ: compression of quality values of aligned sequencing data. Bioinform. 34(10): 1650-1658 (2018) - [j14]Lukasz Roguski, Idoia Ochoa, Mikel Hernaez, Sebastian Deorowicz:
FaStore: a space-saving solution for raw sequencing data. Bioinform. 34(16): 2748-2756 (2018) - 2017
- [j13]Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley:
Effect of lossy compression of quality scores on variant calling. Briefings Bioinform. 18(2): 183-194 (2017) - [c11]Reggy Long, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman:
GeneComp, a New Reference-Based Compressor for SAM Files. DCC 2017: 330-339 - 2016
- [j12]Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman:
Comment on: 'ERGC: an efficient referential genome compression algorithm'. Bioinform. 32(7): 1115-1117 (2016) - [j11]Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman:
GTRAC: fast retrieval from compressed collections of genomic variants. Bioinform. 32(17): 479-486 (2016) - [c10]Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger:
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values. DCC 2016: 221-230 - [c9]Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley:
Denoising of Quality Scores for Boosted Inference and Reduced Storage. DCC 2016: 251-260 - [c8]Mikel Hernaez, Idoia Ochoa, Tsachy Weissman:
A Cluster-Based Approach to Compression of Quality Scores. DCC 2016: 261-270 - [c7]Idoia Ochoa, Albert No, Mikel Hernaez, Tsachy Weissman:
CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores. ITW 2016: 121-125 - 2015
- [j10]Idoia Ochoa, Mikel Hernaez, Tsachy Weissman:
iDoComp: a compression scheme for assembled genomes. Bioinform. 31(5): 626-633 (2015) - [j9]Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman:
QVZ: lossy compression of quality values. Bioinform. 31(19): 3122-3129 (2015) - [j8]Iker Alustiza, Mikel Hernaez, Pedro M. Crespo:
Design of a new scheme for multi-hop wireless networks using decode-and-forward strategy. EURASIP J. Wirel. Commun. Netw. 2015: 136 (2015) - 2014
- [j7]Idoia Ochoa, Mikel Hernaez, Tsachy Weissman:
Aligned genomic data compression via improved modeling. J. Bioinform. Comput. Biol. 12(6) (2014) - 2013
- [j6]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser:
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel. IEEE J. Sel. Areas Commun. 31(8): 1368-1378 (2013) - [c6]Iker Alustiza, Mikel Hernaez, Xabier Insausti, Pedro M. Crespo:
Teaching information theory via a simulation tool for communications systems. EDUCON 2013: 138-145 - [c5]Gerard Vidal, Mikel Hernaez:
Communication Services Empowered with a Classical Chaos Based Cryptosystem. Financial Cryptography 2013: 403 - [c4]Mikel Hernaez, Iker Alustiza, Pedro M. Crespo, Javier Del Ser:
A Decode-and-Forward Scheme for Multihop Wireless Networks. VTC Fall 2013: 1-5 - 2012
- [j5]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser:
Flexible Channel Coding Approach for Short-Length Codewords. IEEE Commun. Lett. 16(9): 1508-1511 (2012) - [i2]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser:
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel. CoRR abs/1203.4764 (2012) - [i1]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser:
A Flexible Channel Coding Approach for Short-Length Codewords. CoRR abs/1203.4924 (2012) - 2011
- [c3]Mikel Hernaez, Pedro M. Crespo:
A Novel Scheme for Message-Forwarding in Multi-Hop Ad-Hoc Wireless Networks. VTC Spring 2011: 1-5 - [c2]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser:
Joint Non-Binary LDPC-BICM and Network Coding with Iterative Decoding for the Multiple Access Relay Channel. VTC Spring 2011: 1-5 - 2010
- [j4]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías:
Erratum to "serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels". IEEE Commun. Lett. 14(3): 235 (2010) - [j3]Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez:
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime. IEEE Commun. Lett. 14(4): 336-338 (2010) - [j2]Idoia Ochoa, Pedro M. Crespo, Mikel Hernaez:
LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation. IEEE Commun. Lett. 14(9): 794-796 (2010) - [c1]Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez:
Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime. MOBILIGHT 2010: 618-625
2000 – 2009
- 2009
- [j1]Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías:
Serially-concatenated LDGM codes for correlated sources over gaussian broadcast channels. IEEE Commun. Lett. 13(10): 788-790 (2009)
Coauthor Index
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