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2020 – today
- 2024
[j31]Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández:
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines. BMC Bioinform. 25(1): 200 (2024)- [j30]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque
, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites. J. Integr. Bioinform. 21(2) (2024) - 2023
- [j29]André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira:
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3. J. Integr. Bioinform. 20(2) (2023) - [j28]María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour:
PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data. Nucleic Acids Res. 51(W1): 411-418 (2023) - [c22]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo: A Pipeline Maker for Phylogenetic Studies. PACBB 2023: 24-33 - 2022
- [j27]Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, David Remedios, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña:
Real-time polyp detection model using convolutional neural networks. Neural Comput. Appl. 34(13): 10375-10396 (2022) - [j26]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
SEDA: A Desktop Tool Suite for FASTA Files Processing. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1850-1860 (2022) - [c21]Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira:
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species. PACBB 2022: 101-110 - 2021
- [j25]Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López:
DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinform. 37(4): 578-579 (2021) - [j24]Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Hugo López-Fernández, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Daniel Glez-Peña:
Deep Neural Networks approaches for detecting and classifying colorectal polyps. Neurocomputing 423: 721-734 (2021) - [j23]Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña:
Compi: a framework for portable and reproducible pipelines. PeerJ Comput. Sci. 7: e593 (2021) - [c20]Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
The pegi3s Bioinformatics Docker Images Project. PACBB 2021: 31-40 - 2020
- [c19]Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira:
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen. PACBB 2020: 42-50 - [c18]Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña:
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. PACBB 2020: 51-59
2010 – 2019
- 2019
- [c17]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
Inferring Positive Selection in Large Viral Datasets. PACBB 2019: 61-69 - 2018
- [j22]Hugo López-Fernández, Jose E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo Miguel Santos, Florentino Fdez-Riverola, José L. Capelo:
S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data. Comput. Methods Programs Biomed. 155: 1-9 (2018) - [c16]Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira:
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees. PACBB 2018: 88-96 - [c15]Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato:
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species. PACBB 2018: 149-156 - 2017
- [c14]Hugo López-Fernández, Jose E. Araújo, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, José Luis Capelo-Martínez:
S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data. PACBB 2017: 1-8 - [c13]Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira:
Automated Collection and Sharing of Adaptive Amino Acid Changes Data. PACBB 2017: 18-25 - 2016
- [j21]Hugo López-Fernández, Gustavo de S. Pessôa, Marco A. Z. Arruda, José Luis Capelo-Martínez, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato:
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data. J. Cheminformatics 8(1): 65:1-65:10 (2016) - 2015
- [j20]Hugo López-Fernández, Hugo Miguel Santos, José L. Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato:
Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. BMC Bioinform. 16: 318:1-318:12 (2015) - 2014
- [j19]Miguel Reboiro-Jato, Fernando Díaz, Daniel Glez-Peña, Florentino Fdez-Riverola:
A novel ensemble of classifiers that use biological relevant gene sets for microarray classification. Appl. Soft Comput. 17: 117-126 (2014) - [j18]Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Web scraping technologies in an API world. Briefings Bioinform. 15(5): 788-797 (2014) - [j17]Miguel Reboiro-Jato, Joel Arrais, José Luís Oliveira, Florentino Fdez-Riverola:
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. BMC Bioinform. 15: 31 (2014) - [j16]Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Florentino Fernández Riverola:
A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification. Int. J. Data Min. Bioinform. 10(4): 455-473 (2014) - 2013
- [j15]Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Aparicio, Diego Gachet, Manuel Buenaga, Florentino Fdez-Riverola:
BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments. Comput. Methods Programs Biomed. 111(1): 139-147 (2013) - [j14]Miguel Reboiro-Jato, Rosalía Laza, Hugo López-Fernández, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola:
genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data. Expert Syst. Appl. 40(1): 52-63 (2013) - [c12]Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña:
A Workflow for the Application of Biclustering to Mass Spectrometry Data. PACBB 2013: 145-153 - 2012
- [j13]Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola:
A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets. Int. J. Data Min. Bioinform. 6(6): 602-616 (2012) - [j12]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira:
ADOPS - Automatic Detection Of Positively Selected Sites. J. Integr. Bioinform. 9(3) (2012) - [j11]José Ramón Méndez, Miguel Reboiro-Jato, Fernando Díaz, Eduardo Díaz, Florentino Fdez-Riverola:
Grindstone4Spam: An optimization toolkit for boosting e-mail classification. J. Syst. Softw. 85(12): 2909-2920 (2012) - [j10]Florentino Fdez-Riverola, Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, José Ramón Méndez:
A JAVA application framework for scientific software development. Softw. Pract. Exp. 42(8): 1015-1036 (2012) - [c11]Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola:
Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. PACBB 2012: 189-196 - [c10]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira:
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. PACBB 2012: 225-229 - 2011
- [j9]Daniel Glez-Peña, Gonzalo Gómez-López, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano:
PileLine: a toolbox to handle genome position information in next-generation sequencing studies. BMC Bioinform. 12: 31 (2011) - [j8]Miguel Reboiro-Jato, Julia Glez-Dopazo, D. Glez, Rosalía Laza, Juan F. Gálvez, Reyes Pavón, Daniel Glez-Peña, Florentino Fdez-Riverola:
Using inductive learning to assess compound feed production in cooperative poultry farms. Expert Syst. Appl. 38(11): 14169-14177 (2011) - [j7]Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Evaluating the effect of unbalanced data in biomedical document classification. J. Integr. Bioinform. 8(3) (2011) - [j6]Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola:
Rapid development of proteomic applications with the AIBench framework. J. Integr. Bioinform. 8(3) (2011) - [j5]Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola:
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Res. 39(Web-Server-Issue): 562-566 (2011) - [c9]Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López:
An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. PACBB 2011: 83-86 - [c8]Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola:
Building Proteomics Applications with the AIBench Application Framework. PACBB 2011: 99-107 - [c7]Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Assessing the Suitability of MeSH Ontology for Classifying Medline Documents. PACBB 2011: 337-344 - [c6]Reyes Pavón, Rosalía Laza, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents. PACBB 2011: 345-353 - 2010
- [j4]Silvana Gómez Meire, Miguel Reboiro-Jato, Carlos H. Fajardo Toro, David N. Olivieri, Florentino Fdez-Riverola:
A robust algorithm for forming note complexes. Inteligencia Artif. 14(47): 27-37 (2010) - [j3]Daniel Glez-Peña, Miguel Reboiro-Jato, Paulo Maia, Miguel Rocha, Fernando Díaz, Florentino Fdez-Riverola:
AIBench: A rapid application development framework for translational research in biomedicine. Comput. Methods Programs Biomed. 98(2): 191-203 (2010) - [j2]Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola:
PathJam: a new service for integrating biological pathway information. J. Integr. Bioinform. 7(1) (2010) - [j1]Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada:
ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Res. 38(Web-Server-Issue): 14-18 (2010) - [c5]Daniel Glez-Peña, Marta Pérez-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Marta Pérez, Fernando Díaz:
Incorporating biological knowledge to microarray data classification through genomic data fusion. FUSION 2010: 1-8 - [c4]Héctor Gómez, Daniel Glez-Peña, Miguel Reboiro-Jato, Reyes Pavón, Fernando Díaz, Florentino Fdez-Riverola:
An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets. IWPACBB 2010: 9-16 - [c3]Miguel Reboiro-Jato, Daniel Glez-Peña, Juan F. Gálvez, Rosalía Laza, Fernando Díaz, Florentino Fdez-Riverola:
A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets. IWPACBB 2010: 25-32 - [c2]Miguel Reboiro-Jato, Daniel Glez-Peña, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Celso Campos, Florentino Fdez-Riverola:
PathAgent: Multi-agent System for Updated Pathway Information Integration. PAAMS (Special Sessions and Workshops) 2010: 77-85 - [c1]Miguel Reboiro-Jato, Daniel Glez-Peña, Hugo Miguel Santos, Mário S. Diniz, Carlos Lodeiro, José L. Capelo, Florentino Fdez-Riverola:
Multi-agent System for Mass Spectrometry Analysis. PAAMS (Special Sessions and Workshops) 2010: 87-95
Coauthor Index
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last updated on 2024-10-07 22:22 CEST by the dblp team
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