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2020 – today
- 2024
[j21]Emily Wong, Ryan J. Urbanowicz
, Tiffani J. Bright, Nicholas P. Tatonetti, Yi-Wen Hsiao, Xiuzhen Huang, Jason H. Moore, Pei-Chen Peng:
Advancing LGBTQ+ inclusion in STEM education and AI research. Patterns 5(6): 101010 (2024)- 2022
- [j20]Jason L. Causey, Keyu Li, Xianghao Chen, Wei Dong, Karl Walker, Jake A. Qualls, Jonathan Stubblefield, Jason H. Moore, Yuanfang Guan, Xiuzhen Huang:
Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1165-1172 (2022) - [j19]Xiuzhen Huang, Yu Zhang, Xuan Guo:
Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1334-1335 (2022) - [j18]Jason L. Causey, Jonathan Stubblefield, Jake A. Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang:
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1387-1392 (2022) - [c26]Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang:
NBT (no-boundary thinking): needed to attend to ethical implications of data and AI. BCB 2022: 74:1-74:2 - [c25]Andy D. Perkins, Joan Peckham, Tayo Obafemi-Ajayi, Xiuzhen Huang:
Team building without boundaries. BCB 2022: 75:1-75:3 - [c24]Jinwei Liu, Xiaonan Zhang, Richard A. Aló, Xiuzhen Huang, Long Cheng, Feng Deng:
CrossCas: A Novel Cross-Platform Approach for Predicting Cascades in Online Social Networks with Hidden Markov Model. GLOBECOM 2022: 6415-6420 - 2021
- [j17]Jennifer Fowler, Jonathan Stubblefield, Jason L. Causey, Jake A. Qualls, Wei Dong, Hongmei Jiang, Karl Walker, Yuanfang Guan, Xiuzhen Huang:
Identify differentially expressed genes with large background samples. Int. J. Comput. Biol. Drug Des. 14(6): 411-428 (2021) - [e1]Hongmei Jiang, Xiuzhen Huang, Jiajie Zhang:
BCB '21: 12th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Gainesville, Florida, USA, August 1-4, 2021. ACM 2021, ISBN 978-1-4503-8450-6 [contents] - 2020
- [j16]Yuanfang Guan, Xueqing Wang, Hongyang Li, Zhenning Zhang, Xianghao Chen, Omer Siddiqui, Sara Nehring, Xiuzhen Huang:
Detecting Asymmetric Patterns and Localizing Cancers on Mammograms. Patterns 1(7): 100106 (2020)
2010 – 2019
- 2019
- [i4]Jason L. Causey, Yuanfang Guan, Wei Dong, Karl Walker, Jake A. Qualls, Fred W. Prior, Xiuzhen Huang:
Lung cancer screening with low-dose CT scans using a deep learning approach. CoRR abs/1906.00240 (2019) - 2018
- [j15]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery. Bioinform. 34(21): 3719-3726 (2018) - [j14]Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore:
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. Bioinform. 34(24): 4302-4304 (2018) - [c23]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: a next-generation evolutionary-based parallel biclustering method. GECCO (Companion) 2018: 59-60 - [i3]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: an artificial intelligence-based parallel biclustering algorithm for pattern discovery. CoRR abs/1801.03039 (2018) - [i2]Jason L. Causey, Junyu Zhang, Shiqian Ma, Bo Jiang, Jake A. Qualls, David G. Politte, Fred W. Prior, Shuzhong Zhang, Xiuzhen Huang:
Highly accurate model for prediction of lung nodule malignancy with CT scans. CoRR abs/1802.01756 (2018) - 2017
- [j13]Suxing Liu, Lucia M. Acosta-Gamboa, Xiuzhen Huang, Argelia Lorence:
Novel Low Cost 3D Surface Model Reconstruction System for Plant Phenotyping. J. Imaging 3(3): 39 (2017) - [c22]Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang:
No-Boundary Thinking in Bioinformatics. PSB 2017: 646-648 - 2016
- [j12]Juntao Liu, Guojun Li, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang:
BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. PLoS Comput. Biol. 12(2) (2016) - [p1]Shiqian Ma, Bo Jiang, Xiuzhen Huang, Shuzhong Zhang:
Tensor models: solution methods and applications. Big Data over Networks 2016: 3-36 - 2015
- [j11]Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore:
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. BioData Min. 8: 7 (2015) - 2014
- [c21]Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Russell L. Malmberg, Liming Cai:
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling. LATA 2014: 308-322 - 2013
- [j10]Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao:
No-boundary thinking in bioinformatics research. BioData Min. 6: 19 (2013) - [i1]Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Liming Cai:
Polynomial kernels collapse the W-hierarchy. CoRR abs/1308.3613 (2013) - 2012
- [c20]Cody Ashby, Kun Wang, Carole L. Cramer, Xiuzhen Huang:
Study of Protein Structure Alignment Problem in Parameterized Computation. BIOINFORMATICS 2012: 174-181 - [c19]Shuzhong Zhang, Kun Wang, Cody Ashby, Bilian Chen, Xiuzhen Huang:
A Unified Adaptive Co-identification Framework for High-D Expression Data. PRIB 2012: 59-70 - 2011
- [c18]Daniel Johnson, Kun Wang, Carole L. Cramer, Xiuzhen Huang:
Graph-based approach for gene markers and applications in next-generation sequencing data analysis. BCB 2011: 511-513 - [c17]Shuzhong Zhang, Kun Wang, Bilian Chen, Xiuzhen Huang:
A New Framework for Co-clustering of Gene Expression Data. PRIB 2011: 1-12 - 2010
- [j9]Liming Cai, Xiuzhen Huang:
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. Algorithmica 57(2): 398-412 (2010) - [c16]Daniel Johnson, Keat Teoh, Cody Ashby, Elizabeth Hood, Xiuzhen Huang:
Analyzing genetic factors involved in recombinant protein expression enhancement. BIBM Workshops 2010: 240-245
2000 – 2009
- 2008
- [j8]Gregory A. Wilkin, Xiuzhen Huang:
A practical comparison of two K-Means clustering algorithms. BMC Bioinform. 9(S-6) (2008) - [j7]Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song:
Parameterized Complexity and Biopolymer Sequence Comparison. Comput. J. 51(3): 270-291 (2008) - [c15]Xiuzhen Huang:
Addressing Bio-sequence and Bio-structure Problems. IMSCCS 2008: 9-16 - [c14]Cody Ashby, Xiuzhen Huang, Jeff Jenness, Joseph Kerby:
A Relational Approach for Pathway Analysis. IMSCCS 2008: 31-36 - 2007
- [j6]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
Polynomial time approximation schemes and parameterized complexity. Discret. Appl. Math. 155(2): 180-193 (2007) - [c13]Xiuzhen Huang, Jing Lai:
Parameterized Graph Problems in Computational Biology. IMSCCS 2007: 129-132 - [c12]Gregory A. Wilkin, Xiuzhen Huang:
K-Means Clustering Algorithms: Implementation and Comparison. IMSCCS 2007: 133-136 - 2006
- [j5]Xiuzhen Huang, Jing Lai, Steven F. Jennings:
Maximum common subgraph: some upper bound and lower bound results. BMC Bioinform. 7(S-4) (2006) - [j4]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
On the computational hardness based on linear FPT-reductions. J. Comb. Optim. 11(2): 231-247 (2006) - [j3]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
Strong computational lower bounds via parameterized complexity. J. Comput. Syst. Sci. 72(8): 1346-1367 (2006) - [j2]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 423-432 (2006) - [c11]Yuan Lin, Jeff Jenness, Xiuzhen Huang:
Parameterized Computation of LCS for Two Sequences. BIOCOMP 2006: 31-40 - [c10]Xiuzhen Huang:
Lower Bounds and Parameterized Approach for Longest Common Subsequence. COCOON 2006: 136-145 - [c9]Xiuzhen Huang:
Negative-Weight Cycle Algorithms. FCS 2006: 109-115 - [c8]Xiuzhen Huang, Jianer Chen:
On PTAS for Planar Graph Problems. IFIP TCS 2006: 299-313 - [c7]Xiuzhen Huang, Jing Lai:
Maximum Common Subgraph: Upper Bound and Lower Bound Results. IMSCCS (1) 2006: 40-47 - [c6]Liming Cai, Xiuzhen Huang:
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. IWPEC 2006: 96-108 - 2005
- [j1]Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia:
Tight lower bounds for certain parameterized NP-hard problems. Inf. Comput. 201(2): 216-231 (2005) - [c5]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
W-Hardness Under Linear FPT-Reductions: Structural Properties and Further Applications. COCOON 2005: 975-984 - [c4]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 - 2004
- [c3]Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia:
Tight Lower Bounds for Certain Parameterized NP-Hard Problems. CCC 2004: 150-160 - [c2]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
Polynomial Time Approximation Schemes and Parameterized Complexity. MFCS 2004: 500-512 - [c1]Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia:
Linear FPT reductions and computational lower bounds. STOC 2004: 212-221
Coauthor Index
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