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2020 – today
- 2023
[j10]Wayland Yeung, Zhongliang Zhou
, Sheng Li, Natarajan Kannan:
Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings. Briefings Bioinform. 24(1) (2023)- [j9]Wayland Yeung, Zhongliang Zhou, Liju Mathew, Nathan Gravel, Rahil Taujale, Brady O'boyle, Mariah Salcedo, Aarya Venkat, William Lanzilotta, Sheng Li, Natarajan Kannan:
Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies. Briefings Bioinform. 24(1) (2023) - [j8]Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li, Natarajan Kannan:
Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions. Bioinform. 39(2) (2023) - [i1]Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo, Nathan Gravel, Wayland Yeung, Aarya Venkat, Dongliang Guo, Jielu Zhang, Natarajan Kannan, Sheng Li:
XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications. CoRR abs/2312.06082 (2023) - 2022
- [j7]Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j6]Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan:
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. BMC Bioinform. 22(1): 446 (2021) - 2020
- [j5]Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat, Sheng Li, Ping Ma, Khaled Rasheed, Natarajan Kannan:
Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction. BMC Bioinform. 21(1): 520 (2020) - [j4]Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2017
- [j3]Daniel Ian McSkimming, Khaled Rasheed, Natarajan Kannan:
Classifying kinase conformations using a machine learning approach. BMC Bioinform. 18(1): 86:1-86:15 (2017) - 2016
- [j2]Jana Selvaganesan, Kannan Natarajan:
Unsupervised feature based key-frame extraction towards face recognition. Int. Arab J. Inf. Technol. 13(6A): 777-783 (2016) - 2015
- [c5]Shima Dastgheib, Daniel Ian McSkimming, Natarajan Kannan, Krys J. Kochut:
Creating Biomedical Ontologies Using mOntage. DILS 2015: 118-132 - [c4]Shima Dastgheib, Daniel Ian McSkimming, Kannan Natarajan, Krys J. Kochut:
SPARQLing: A Graphical Interface for SPARQL. ISWC (Posters & Demos) 2015 - 2014
- [j1]Man Chon U, Eric Talevich, Samiksha Katiyar, Khaled Rasheed, Natarajan Kannan:
Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers. PLoS Comput. Biol. 10(4) (2014) - 2011
- [c3]Gurinder Pal Singh Gosal, Natarajan Kannan, Krys J. Kochut:
ProKinO: A Framework for Protein Kinase Ontology. BIBM 2011: 550-555
2000 – 2009
- 2006
- [c2]Natarajan Kannan, Toufeeq Hussain:
Live URLs: breathing life into URLs. WWW 2006: 879-880 - 2002
- [c1]Mohan G. Kabadi, Natarajan Kannan, Palanidaran Chidambaram, Suriya Narayanan, M. Subramanian, Ranjani Parthasarathi:
Dead-Block Elimination in Cache: A Mechanism to Reduce I-cache Power Consumption in High Performance Microprocessors. HiPC 2002: 79-88
Coauthor Index
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