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ORCIDSam Griffiths-Jones
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2020 – today
- 2021
[j21]Ioanna Kalvari
, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov:
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49(Database-Issue): D192-D200 (2021)- [j20]Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021)
2010 – 2019
- 2019
- [j19]Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones:
miRBase: from microRNA sequences to function. Nucleic Acids Res. 47(Database-Issue): D155-D162 (2019) - 2015
- [j18]Thomas Bleazard, Janine A. Lamb, Sam Griffiths-Jones:
Bias in microRNA functional enrichment analysis. Bioinform. 31(10): 1592-1598 (2015) - 2014
- [j17]Ana Kozomara, Sam Griffiths-Jones:
miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42(Database-Issue): 68-73 (2014) - 2012
- [j16]Antonio Marco, Sam Griffiths-Jones:
Detection of microRNAs in color space. Bioinform. 28(3): 318-323 (2012) - 2011
- [j15]Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman:
Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res. 39(Database-Issue): 141-145 (2011) - [j14]Ana Kozomara, Sam Griffiths-Jones:
miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39(Database-Issue): 152-157 (2011)
2000 – 2009
- 2009
- [j13]Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman:
Rfam: updates to the RNA families database. Nucleic Acids Res. 37(Database-Issue): 136-140 (2009) - 2008
- [j12]Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright:
miRBase: tools for microRNA genomics. Nucleic Acids Res. 36(Database-Issue): 154-158 (2008) - 2006
- [j11]Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright:
miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 34(Database-Issue): 140-144 (2006) - [j10]Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman:
Pfam: clans, web tools and services. Nucleic Acids Res. 34(Database-Issue): 247-251 (2006) - 2005
- [j9]Sam Griffiths-Jones:
RALEE--RNA ALignment Editor in Emacs. Bioinform. 21(2): 257-259 (2005) - [j8]Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman:
Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33(Database-Issue): 121-124 (2005) - 2004
- [j7]Sam Griffiths-Jones:
The microRNA Registry. Nucleic Acids Res. 32(Database-Issue): 109-111 (2004) - [j6]Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy:
The Pfam protein families database. Nucleic Acids Res. 32(Database-Issue): 138-141 (2004) - 2003
- [j5]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j4]Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy:
Rfam: an RNA family database. Nucleic Acids Res. 31(1): 439-441 (2003) - 2002
- [j3]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist:
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j2]Sam Griffiths-Jones, Alex Bateman:
The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinform. 18(9): 1243-1249 (2002) - [j1]Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer:
The Pfam Protein Families Database. Nucleic Acids Res. 30(1): 276-280 (2002)
Coauthor Index
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