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2010 – 2019
- 2016
[p2]Tiina Liiving, Syed Murtuza Baker, Björn H. Junker:
Biochemical Fundamentals. Modeling in Systems Biology, The Petri Net Approach 2016: 19-36- [p1]Stefan Schuster, Björn H. Junker:
Topological Analysis of Metabolic and Regulatory Networks. Modeling in Systems Biology, The Petri Net Approach 2016: 209-224 - 2015
- [j18]Syed Murtuza Baker
, C. Hart Poskar, Falk Schreiber, Björn H. Junker:
A unified framework for estimating parameters of kinetic biological models. BMC Bioinform. 16: 104:1-104:21 (2015) - 2013
- [j17]Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker:
An improved constraint filtering technique for inferring hidden states and parameters of a biological model. Bioinform. 29(8): 1052-1059 (2013) - 2012
- [j16]C. Hart Poskar, Jan Huege, Christian Krach, Mathias Franke, Yair Shachar-Hill, Björn H. Junker:
iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis. BMC Bioinform. 13: 295 (2012) - [j15]Hendrik Rohn, Anja Hartmann, Astrid Junker, Björn H. Junker, Falk Schreiber:
FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks. BMC Syst. Biol. 6: 33 (2012) - [j14]Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012) - 2011
- [j13]Syed Murtuza Baker, C. Hart Poskar, Björn H. Junker:
Unscented Kalman filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models. EURASIP J. Bioinform. Syst. Biol. 2011: 7 (2011) - [j12]Stephan Weise, Jinbo Chen, Björn H. Junker, Matthias Klapperstück, Matthias Lange, Falk Schreiber, Uwe Scholz:
Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen. it Inf. Technol. 53(5): 234-240 (2011) - 2010
- [j11]Syed Murtuza Baker, Kai Schallau, Björn H. Junker:
Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models. J. Integr. Bioinform. 7(3) (2010) - [j10]Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2009
- [j9]Eva Grafahrend-Belau, Christian Klukas, Björn H. Junker, Falk Schreiber:
FBA-SimVis: interactive visualization of constraint-based metabolic models. Bioinform. 25(20): 2755-2757 (2009) - [c2]Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. DILS 2009: 196-203 - [c1]Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen. GI Jahrestagung 2009: 693-697 - 2008
- [j8]Eva Grafahrend-Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Björn H. Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch:
Modularization of biochemical networks based on classification of Petri net t-invariants. BMC Bioinform. 9 (2008) - [j7]Eva Grafahrend-Belau, Stephan Weise, Dirk Koschützki, Uwe Scholz, Björn H. Junker, Falk Schreiber:
MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res. 36(Database-Issue): 954-958 (2008) - 2006
- [j6]Björn H. Junker, Christian Klukas, Falk Schreiber:
VANTED: A system for advanced data analysis and visualization in the context of biological networks. BMC Bioinform. 7: 109 (2006) - [j5]Björn H. Junker, Dirk Koschützki, Falk Schreiber:
Exploration of biological network centralities with CentiBiN. BMC Bioinform. 7: 219 (2006) - [j4]Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker:
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7: 465 (2006) - [j3]Björn H. Junker, Dirk Koschützki, Falk Schreiber:
Kinetic Modelling with the Systems Biology Modelling Environment SyBME. J. Integr. Bioinform. 3(1) (2006) - 2005
- [j2]Ina Koch, Björn H. Junker, Monika Heiner:
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. Bioinform. 21(7): 1219-1226 (2005) - 2004
- [j1]Dirk Steinhauser, Björn H. Junker, Alexander Lüdemann, Joachim Selbig, Joachim Kopka:
Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinform. 20(12): 1928-1939 (2004)
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