Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

SB Ficarro, ML McCleland, PT Stukenberg… - Nature …, 2002 - nature.com
Protein kinases are coded by more than 2,000 genes and thus constitute the largest single
enzyme family in the human genome. Most cellular processes are in fact regulated by the …

Targeting transcription regulation in cancer with a covalent CDK7 inhibitor

N Kwiatkowski, T Zhang, PB Rahl, BJ Abraham… - Nature, 2014 - nature.com
Tumour oncogenes include transcription factors that co-opt the general transcriptional
machinery to sustain the oncogenic state, but direct pharmacological inhibition of …

Androgen receptor phosphorylation: regulation and identification of the phosphorylation sites

D Gioeli, SB Ficarro, JJ Kwiek, D Aaronson… - Journal of Biological …, 2002 - ASBMB
Activation of signal transduction kinase cascades has been shown to alter androgen
receptor (AR) activity. Although it has been suggested that changes in AR phosphorylation …

Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma

P Caro, AU Kishan, E Norberg, IA Stanley, B Chapuy… - Cancer cell, 2012 - cell.com
Molecular signatures have identified several subsets of diffuse large B cell lymphoma
(DLBCL) and rational targets within the B cell receptor (BCR) signaling axis. The OxPhos …

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant… - Nature, 2012 - nature.com
Genotypic differences greatly influence susceptibility and resistance to disease.
Understanding genotype–phenotype relationships requires that phenotypes be viewed as …

Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics

N Khidekel, SB Ficarro, PM Clark, MC Bryan… - Nature chemical …, 2007 - nature.com
The addition of the monosaccharide β-N-acetyl-d-glucosamine to proteins (O-GlcNAc
glycosylation) is an intracellular, post-translational modification that shares features with …

Discovery of potent and selective covalent inhibitors of JNK

T Zhang, F Inesta-Vaquera, M Niepel, J Zhang… - Chemistry & biology, 2012 - cell.com
The mitogen-activated kinases JNK1/2/3 are key enzymes in signaling modules that
transduce and integrate extracellular stimuli into coordinated cellular response. Here, we …

LIN28 regulates stem cell metabolism and conversion to primed pluripotency

J Zhang, S Ratanasirintrawoot, S Chandrasekaran… - Cell stem cell, 2016 - cell.com
The RNA-binding proteins LIN28A and LIN28B play critical roles in embryonic development,
tumorigenesis, and pluripotency, but their exact functions are poorly understood. Here, we …

Exploring the O-GlcNAc proteome: Direct identification of O-GlcNAc-modified proteins from the brain

N Khidekel, SB Ficarro, EC Peters… - Proceedings of the …, 2004 - National Acad Sciences
The covalent modification of intracellular proteins by O-linked β-N-acetylglucosamine (O-
GlcNAc) is emerging as a crucial regulatory posttranslational modification akin to …

[HTML][HTML] Treatment-induced tumor dormancy through YAP-mediated transcriptional reprogramming of the apoptotic pathway

KJ Kurppa, Y Liu, C To, T Zhang, M Fan, A Vajdi… - Cancer cell, 2020 - cell.com
Eradicating tumor dormancy that develops following epidermal growth factor receptor
(EGFR) tyrosine kinase inhibitor (TKI) treatment of EGFR-mutant non-small cell lung cancer …