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Danielle L Swaney

UCSF
在 ucsf.edu 的電子郵件地址已通過驗證
被引用 14919 次

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

DL Swaney, P Beltrao, L Starita, A Guo, J Rush… - Nature …, 2013 - nature.com
Cross-talk between different types of post-translational modifications on the same protein
molecule adds specificity and combinatorial logic to signal processing, but it has not been …

Phosphoproteomics for the masses

PA Grimsrud, DL Swaney, CD Wenger… - ACS chemical …, 2010 - ACS Publications
Protein phosphorylation serves as a primary mechanism of signal transduction in the cells of
biological organisms. Technical advancements over the last several years in mass …

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier… - Nature, 2020 - nature.com
A newly described coronavirus named severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2), which is the causative agent of coronavirus disease 2019 (COVID-19), has …

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors

DL Swaney, GC McAlister, M Wirtala… - Analytical …, 2007 - ACS Publications
Electron-transfer dissociation (ETD) delivers the unique attributes of electron capture
dissociation to mass spectrometers that utilize radio frequency trapping-type devices (eg …

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

DL Swaney, CD Wenger, JJ Coon - Journal of proteome research, 2010 - ACS Publications
Large-scale protein sequencing methods rely on enzymatic digestion of complex protein
mixtures to generate a collection of peptides for mass spectrometric analysis. Here we …

Decision tree–driven tandem mass spectrometry for shotgun proteomics

DL Swaney, GC McAlister, JJ Coon - Nature methods, 2008 - nature.com
Mass spectrometry has become a key technology for modern large-scale protein
sequencing. Tandem mass spectrometry, the process of peptide ion dissociation followed by …

[HTML][HTML] The global phosphorylation landscape of SARS-CoV-2 infection

M Bouhaddou, D Memon, B Meyer, KM White… - Cell, 2020 - cell.com
The causative agent of the coronavirus disease 2019 (COVID-19) pandemic, severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected millions and killed …

Evolution of enhanced innate immune evasion by SARS-CoV-2

LG Thorne, M Bouhaddou, AK Reuschl… - Nature, 2022 - nature.com
The emergence of SARS-CoV-2 variants of concern suggests viral adaptation to enhance
human-to-human transmission,. Although much effort has focused on the characterization of …

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

DL Swaney, CD Wenger… - Proceedings of the …, 2009 - National Acad Sciences
Protein phosphorylation is central to the understanding of cellular signaling, and cellular
signaling is suggested to play a major role in the regulation of human embryonic stem (ES) …

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts… - Science, 2020 - science.org
INTRODUCTION The emergence of three lethal coronaviruses in< 20 years and the urgency
of the COVID-19 pandemic have prompted efforts to develop new therapeutic strategies …