TNT, a free program for phylogenetic analysis
PA Goloboff, JS Farris, KC Nixon - Cladistics, 2008 - Wiley Online Library
… data sets, all other programs for phylogenetic analysis require that continuous characters be
… discrete states; TNT instead optimizes continuous characters as such (Goloboff et al., 2006). …
… discrete states; TNT instead optimizes continuous characters as such (Goloboff et al., 2006). …
TNT version 1.5, including a full implementation of phylogenetic morphometrics
PA Goloboff, SA Catalano - Cladistics, 2016 - Wiley Online Library
… ), the program continued being improved on several fronts. Most of the general options for a
full phylogenetic analysis were already present by 2008, when the program was made freely …
full phylogenetic analysis were already present by 2008, when the program was made freely …
[書籍][B] From observations to optimal phylogenetic trees: phylogenetic analysis of morphological data: Volume 1
PA Goloboff - 2022 - taylorfrancis.com
… use TNT—which focuses on parsimony. It is not the only program for phylogenetic analysis,
… Cladistic analysis is thus a subset of phylogenetic analysis, but since this book focuses on …
… Cladistic analysis is thus a subset of phylogenetic analysis, but since this book focuses on …
[書籍][B] Refining Phylogenetic Analyses: Phylogenetic Analysis of Morphological data: Volume 2
PA Goloboff - 2022 - taylorfrancis.com
… The practical parts of this book thus use TNT—which focuses on parsimony. It is not the only
program for phylogenetic analysis, but (having developed it over the course of more than 20 …
program for phylogenetic analysis, but (having developed it over the course of more than 20 …
Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups
… cost of calculating large phylogenies has so far been a major … in TNT can successfully process
the largest phylogenetic data … tree-calculation algorithms effectively retrieve phylogenetic …
the largest phylogenetic data … tree-calculation algorithms effectively retrieve phylogenetic …
A phylogenetic C interpreter for TNT
PA Goloboff, ME Morales - Bioinformatics, 2020 - academic.oup.com
… TNT (a widely used program for phylogenetic analysis) includes an interpreter for a scripting
language, but that implementation is nonstandard and uses several conventions of its own. …
language, but that implementation is nonstandard and uses several conventions of its own. …
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
… analysis of datasets. We here briefly describe the computationally most efficient and versatile
parsimony software, TNT, which can be used for phylogenetic … designed for the analysis of …
parsimony software, TNT, which can be used for phylogenetic … designed for the analysis of …
GB‐to‐TNT: facilitating creation of matrices from GenBank and diagnosis of results in TNT
PA Goloboff, SA Catalano - Cladistics, 2012 - Wiley Online Library
… phylogenetic studies use molecular sequences as a source of data for phylogenetic analyses…
Here we present GB→TNT (GenBank-to-TNT), an open source program which implements …
Here we present GB→TNT (GenBank-to-TNT), an open source program which implements …
New TNT routines for parallel computing with MPI
ME Morales, PA Goloboff - Molecular Phylogenetics and Evolution, 2023 - Elsevier
… TNT (a widely used program for phylogenetic analysis under parsimony) allows … remain
unpublished, few studies have taken advantage of the parallelization routines of TNT. In addition, …
unpublished, few studies have taken advantage of the parallelization routines of TNT. In addition, …
Many paths to parsimony
AVZ Brower - 2023 - Taylor & Francis
… Goloboff presents sometimes excruciatingly detailed analysis of the results of TNT and other
programs for … First, he argues that most books addressing phylogenetic analysis address the …
programs for … First, he argues that most books addressing phylogenetic analysis address the …