GreenGate Genomics’ Post

GreenGate Genomics is ready for the spring, are you? 🌱 ☀ Do you want to find out how our expertise and know-how can support your next research journey? Visit our website www.greengategenomics.com, we have made some allaround changes to better showcase what we stand for and how we can help researchers and scientists with their projects. ◼ Interested in talking to us? Use our contact form to reach out! ◼ Take a look at our resources page to find some useful tips on genomic data analysis and processing. ◼ Want to leave feedback? With our new feedback form you can do just that! ◼ Prefer 🇩🇪 ? Our website is available in both English and German now! Whether you're a researcher at an academic institution, a government agency, or a biotech company, we would be happy to discuss your specific bioinformatic and genomic needs and we are happy to answer any questions! #Bioinformatics #SpringProjects #Innovation #Research #Genomics #Biotechnology

Always looking to get better at what we do. Take advantage of our new features to let us know how we can best support microbial genomics users! 💹 #TuesdayMotivation #StartUp #Bioinformatics #MicrobialGenomics

🔬 Tutorial on #Bioinformatics and #PathwayAnalysis ! Comprehensive guide to utilizing ConsensusPathDB. Check it out now and take your research to the next level! #ConsensusPathDB #ResearchTools #DataAnalysis #Tutorial #microbiologist #dataanalysis #aiou #nih 🧬💻 https://lnkd.in/dKVAUM94

I am pleased to share that our recent bioinformatic workflow is part of preprint available on BioRxiv: https://lnkd.in/gHRsbdy5 I collaborated with Jonathan Magasin to develop and optimize a customizable bioinformatic pipeline that streamlines and standardizes the genetic analysis of amplicon sequence variants (ASVs). This work is part of a project under the supervision of Kendra Turk-Kubo and with the support of Jonathan Zehr, Matthew Mills, and Shun Yan Cheung. This workflow facilitates the acquisition and aggregation of multiple next generation sequencing (NGS) datasets into a unified database. A series of customizable stages then apply rigorous sequence validation and annotation techniques to generate high-quality ASVs. Downstream analysis is enhanced through the acquisition of environmental and ecological metadata from Simons Foundation's CMAP data repositories. Applying this workflow, we compiled publicly available nifH data, a widely utilized genomic marker for nitrogen fixers (diazotrophs), and generated a comprehensive, globally distributed gene database. We then demonstrate the effectiveness of this database by revealing global biogeographical patterns of prominent diazotroph groups and highlight the influence of sea surface temperature. Please check it out! #bioinformatics #dataanalytics #microbialgenetics #microbialecology #environmentalresearch #preprint #opensource

I am thrilled to announce that I have completed the bioinformatics course 201 held by Genomac Institute Inc. The course covered DNA sequencing, sequence data management and importation,codon identification and translation.It also covered comparative genomics where genomes from different species compared and identification of conserved regions. At the end of the course,a practical assignment was given to ensure that all the taught techniques were very well understood and ready to apply them. #bioinformatics,#genome #biotechnology.

#Retrieving_sequence_in_correct_orientation - In this lecture, I describe the basic concept of Sequence - #Plus #strand, #minus #strand, #complement and #reverse #complement and also explain the steps to #retrieve the sequence of the gene from #UCSC #genome #Browser #sequence #plus_strand #minus_strand #complement #reverse_complement #UCSC_Genome_Browser #lets_grow_together #vipins_e_classroom #bioinformatics #biotech https://lnkd.in/dnpD8n-V

Now onto a session on multiomics and systems biology. The current talk is on the development of software to make deconvolution from bulk into single cells from epigenomics data

At the moment there is no efficient way to precisely insert large chunks of DNA in a plants genome. Now American researchers show a way in Nature Magazine that is ten times as efficient than current methods. Read more about this study on my blog https://lnkd.in/ewAZYbcs Or go directly to the article: Liu, P., Panda, K., Edwards, S.A. et al. Transposase-assisted target-site integration for efficient plant genome engineering. Nature 631, 593–600 (2024). https://lnkd.in/ees3d6U9 #plantscience

🌱 Did You Know? Publications on Single-Cell Genomics in Plants Lag Behind Human Research by a 20:1 Ratio! This staggering gap highlights an enormous opportunity for research in plants and animals. But many factors hold labs back from leveraging single-cell genomics to its full potential – from optimization of methods to your specific species/tissue, to access to the technology and bioinformatics analysis, and cost. We created SolusCell to change that. Our mission is to provide access to single-cell genomics to ANY lab, regardless of your level of expertise, and tailor services to your needs: - scBASIC if you just need single-cell RNA sequencing libraries but prefer to sequence and analyze the data yourself. - scPLUS will add sequencing and standard bioinformatics through our analysis pipelines. - scPREMIUM gives access to long-term storage and data mining applications for comprehensive insights. For more information about these services and FAQs, visit us at soluscell.com. SolusCell is your ally in single-cell genomics. #SolusCell #SingleCellGenomics #PlantGenomics #AnimalGenomics #BiotechStartup #ScienceInnovation #ResearchAndDevelopment