Muhammad Saadat Abbas’ Post

bioinformatics

Bioinformatics

Bioinformatics

🌟 Reflecting on My Bioinformatics Journey 🌟[SaturdayMusings] As I delve deeper into bioinformatics, I've come to appreciate how essential it is to have a strong foundation in molecular biology. Understanding the basics of molecular biology has been crucial in navigating and comprehending the complex concepts and tools in bioinformatics. This journey has been incredibly enriching and has reinforced my belief in the interconnection between these fields. My experiences so far have been nothing short of fascinating. The process of learning, discovering new techniques, and applying bioinformatics methods to real-world problems has been both challenging and rewarding. I am particularly excited about the next chapter of my journey, where I will immerse myself in a genomics lab. This hands-on experience will allow me to deepen my understanding and work directly with genomic data, an opportunity I eagerly anticipate. Next-generation sequencing (NGS) is an area that particularly excites me. The potential of NGS to revolutionize our understanding of genomics and its applications in healthcare and research is immense. I am looking forward to gaining more knowledge and expertise in this cutting-edge technology, which will be pivotal in my career growth. Throughout this journey, I have been rooting for myself, pushing through challenges, and celebrating every milestone. I am on my toes, ready to seize the next opportunity that comes my way. The field of bioinformatics is ever-evolving, and I am thrilled to be a part of it, continuously learning and contributing to its advancements. Here's to more discoveries, continued growth, and making a meaningful impact in the world of bioinformatics! 🚀🔬✨ #Bioinformatics #MolecularBiology #Genomics #NextGenSequencing #LearningJourney #CareerGrowth #Science #Research #FutureReady #linkedin

🔬✨ From Bench to Bioinformatics: My Journey in the World of Genomic Data in Romania 🇷🇴 ✨🔬 Stepping into the bioinformatics lab for the first time was like entering a new realm of scientific discovery. The hum of computers processing massive datasets, the collaborative energy of brilliant minds working together, and the potential for groundbreaking insights made every moment thrilling. During my time at the Oncology Research Institute, I had the incredible opportunity to bridge my molecular biotechnology expertise with bioinformatics. 🧬🔍 Analyzing genomic data from clinical trials, I learned to navigate powerful tools like BLAST and FASTA and honed my skills in Python and R. 📊💻 One evening, as I sifted through layers of data, I discovered a recurring mutation in a specific gene across multiple patient samples. This finding led to a series of experiments that unveiled new pathways in cancer progression, highlighting the profound impact bioinformatics can have on understanding and treating diseases. Working in the bioinformatics lab not only expanded my technical skills but also reinforced my passion for integrating data-driven insights with molecular research. I’m excited to continue exploring this dynamic field and contribute to innovations that can transform healthcare. 🚀 Ready to collaborate, innovate, and push the boundaries of what's possible in bioinformatics! #Bioinformatics #MolecularBiotechnology #Genomics #CancerResearch #DataScience #HealthcareInnovation #Python #R #ClinicalTrials #ResearchJourney #ScientificDiscovery

Bioinformatics for Biologists: Analysing and Interpreting Genomics Datasets – Weeks 1 & 2 I’m excited to share that I’ve completed the first two weeks of the "Bioinformatics for Biologists" course! In Week 1, we laid a solid foundation by learning about environment variables and installing essential bioinformatics tools. We explored next-generation sequencing (NGS), its significance, and various file formats. Additionally, we covered the steps involved in an NGS pipeline, including sequence quality control, mapping, and variant calling, and practiced running commands on the UNIX command line. In Week 2, we focused on workflows and workflow management systems like Nextflow. We learned how to automate complex tasks with Nextflow, explored the viralrecon pipeline from the nf-core project, set up a samplesheet, and ran the pipeline ourselves. We also examined the outputs to assess data quality for downstream analyses. A highlight was hearing from Dr. Phelelani T. Mpangase, a professional bioinformatician, about how Nextflow has transformed his approach to large genomics datasets. These experiences are already proving invaluable for my future studies and research in bioinformatics and clinical biochemistry! Bioinformatics requires constant practice to stay proficient, and I'm committed to continually honing these skills. Happy learning 😁 #Bioinformatics #Genomics #ClinicalBiochemistry #Nextflow #LearningJourney #DataScience

This Guide Will Assist You to Quick Start Your Bioinfo Dimension So Explore More..

An useful guide for bioinformatics learners.

🎉 "Thrilled to share that I've successfully completed my NGS course and gained a deep understanding of cutting-edge bioinformatics techniques with Decode Life! This course has been an incredible learning experience, allowing me to deepen my understanding of various cutting-edge bioinformatics techniques and tools, which will be instrumental in my journey as an MSc Bioinformatics student. Some of the key areas I explored include: 🖥️ **Linux Command Line & Advanced Linux Commands**   💻 **GitHub for Version Control**   📊 **R Programming for Data Analysis**   🧬 **Introductory NGS, File Formats, & Quality Control**   💡 **Bulk RNASeq**   🧠 **Spatial Transcriptomics**   - Module 1: Introduction to Spatial Transcriptomics & Methods   - Module 2: 10X Visium & Space Ranger   - Module 3: Seurat Object, Quality Control, Integration Methods   - Module 4: Normalization, Dimensional Reduction, Clustering   - Module 5: Identifying Differentially Expressed Genes & Markers   - Module 6: Manual and Automated Cell Annotation   - Module 7: Merfish Overview & Cell Segmentation  🔬 **lncRNA Research**   - General lncRNA and lncRNA Expression Databases   - Protein Coding Potential, Subcellular Localization & Structural Conformation   - lncRNA Prediction using RNASeq Data   - Functional Roles of lncRNA & Interaction with mRNA  💡 **miRNA Identification from NGS Datasets**  This comprehensive course has equipped me with hands-on experience and theoretical knowledge in next-gen sequencing technologies. I am excited to apply these skills to real-world bioinformatics challenges and contribute to research in genomics and transcriptomics. Looking forward to the next steps in my bioinformatics journey! 🚀 #Bioinformatics #NextGenSequencing #NGS #SpatialTranscriptomics #RNASeq #lncRNA #DecodeLife #MScBioinformatics #Research #Genomics #Biotechnology #R_Programming #Linux