Seqera’s Post

In episode 45 of the Channels podcast, Sasha Dagayev from Seqera (formerly tinybio) shares his journey from working in tech and consumer spaces to entering bioinformatics during the pandemic. Sasha discusses the challenges and innovations behind tinybio, including the evolution towards integrating Generative AI (ChatGPT) to simplify bioinformatics tasks. Key points include: - Sasha's transition from tech to bioinformatics post-pandemic. - Initial challenges and pivot towards Generative AI for tinybio. - Not just ChatGPT: code execution and iteration. - AI concepts: Foundational models, RAG, Langchain and fine tuning. - What makes Seqera and GenAI the perfect match. Stay tuned for more exciting updates soon at the upcoming Nextflow Summit! - tinybio: https://www.tinybio.cloud/ - Blog - Seqera acquires tinybio: https://lnkd.in/dBPZsWNV - Nextflow Summit 2024 Barcelona: https://lnkd.in/d43zhE7m

🚀 Blog Post: Optimizing image segmentation modeling using Seqera platform Did you know that interactive analysis is considered one of the most challenging steps in bioinformatics? 🔬 Research workflows often require further downstream analysis beyond pipeline runs. However, users are faced with time-consuming and error-prone manual tasks such as transferring data between cloud and local storage and navigating multiple languages, libraries, and tools. 💡 Seqera's Data Studios makes this easier by bringing reproducible, containerized and interactive analytical notebook environments to your data in real-time, streamlining the end-to-end data lifecycle! 👉 Read our latest blog to explore how #SeqeraPlatform features can be used to optimize image segmentation model iteration in the nf-core/molkart pipeline: https://lnkd.in/dcvXedhC #InteractiveEnvironments #TertiaryAnalysis #DataStudios

The bio/life science community in Cambridge is thriving... which is why we're excited to bring our #SeqeraSessions to the city on Sept 12! 🚀 🇬🇧 Learn #Nextflow foundations with Harshil Patel and Adam Talbot and earn your certificate—only a couple of spots left! 🎓 In the afternoon, discover the role of #NLP, #LLMs, and #OpenScience in bioinformatics with experts from AstraZeneca, biomodal, Ryvu Therapeutics, and Seqera. Plus, don’t miss the eagerly awaited presentation by Peter Saffrey, Director of Bioinformatics and Software Engineering at biomodal! 🔍✨ Great chance to stay at the forefront of bioinformatics - register now to secure your place 🤗 : https://lnkd.in/dPf-ce_E

🌍 We’re thrilled to announce Loïc Lannelongue from the University of Cambridge as a keynote speaker at #NextflowSummit Barcelona! 🇪🇸 Loïc leads the Green Algorithms project, an initiative promoting more environmentally sustainable computational science. Through the prism of the GREENER principles for environmentally sustainable science, he will discuss how to estimate the impact of our work, the new Green DiSC certification framework, and the hurdles in green computing. Don’t miss this opportunity to hear from Loïc and others! 🌱 Register now to catch his talk—this is the last week to enjoy a 20% discount before prices go up after August 31: https://lnkd.in/dwZQviws

📢 WEBINAR ALERT: Unlock the power of high-resolution cost tracking and optimization with Seqera 🗓️ Wednesday, September 11 at 12:00 PM EST Join our upcoming webinar and learn how to optimize your cloud costs and resource usage with #Nextflow and #Seqera: ➡ Unlock the power of high-resolution resource tagging ➡ Gain insights into how the run and task cost estimation feature works ➡ Explore default and custom S3 object tagging with Fusion ➡ Learn how to optimize cloud resources and spending with Seqera 🔗 Register Now: https://lnkd.in/dD93ccFQ #Webinar #Nextflow #Seqera #Bioinformatics 

Our pipeline launch and relaunch forms have been completely reimagined as smaller, multiple-steps that significantly upgrade the user experience by providing organized navigation, enhanced validation, and improved clarity on requirements and options, with much more developer-friendly views (choose between inline, JSON, or YAML rendering of configured parameters). 👉 Learn more about the drivers behind this upgrade and how to enable it for your pipelines: https://lnkd.in/dnwtwEhP

“Seqera Platform provides us with huge flexibility to deploy genomics workloads anywhere.” 🧬 Discover why Seqera is the choice for seamless #Nextflow pipeline management. Sign up for free now: https://lnkd.in/dzGSFtpr

Join us as we welcome Alexander Peltzer, a renowned figure in the #Nextflow and nf-core communities. In this episode, Alex shares his journey from academia to the pharmaceutical industry, highlighting the critical role of regulatory frameworks in bioinformatics. 🌟 Key Highlights: - The transition from working at QBiC to Boehringer Ingelheim. - The importance of maintaining high-quality, reproducible pipelines in bioinformatics. - Understanding regulatory requirements and their impact on clinical trials. - How regulatory standards and open-source initiatives like nf-core are shaping the future of bioinformatics. Alex also discusses the formation of the nf-core Regulatory Special Interest Group, which aims to bring together experts in the field to establish and promote best practices for ensuring pipeline quality and compliance with regulatory standards. Looking forward to seeing many of you at the upcoming #NextflowSummit in Barcelona this October! We’ll be working with this #regulatory group during the nf-core hackathon. #Bioinformatics #Pharma #Regulation #AlexPeltzer #NextflowSummit

🥁 The #NextflowSummit program is finally here! Get ready for an exciting gathering in Barcelona from Oct 30 - Nov 1, where innovation meets expertise 🌟 Join us for an extended lineup of talks from top minds in the community and industry! ⏳ Hurry - only 2 weeks left to snag a 20% early-bird discount. Don’t miss out—secure your spot now: https://lnkd.in/dDc6pjdy

We're excited to announce the new Pipeline Launch forms! 🚀 User experience is at the heart of what we do, and your feedback drives our improvements. We are excited to introduce our newly redesigned forms, marking the first step in a larger effort to enhance the entire form submission experience across our platform. 🔬 Why update the pipeline launch experience? ➡ Simpler navigation: The new multi-step approach ensures that users can easily navigate through pipeline form submissions without unnecessary steps. Key information is stored and grouped logically, allowing users to focus on the essential steps. ➡ Enhanced validation: We've added robust validation features to ensure the accuracy and completeness of submitted information, reducing errors and helping users avoid common pitfalls during pipeline configuration. ➡ Improved clarity: Form content has been updated to be more concise and clear, ensuring users can quickly understand the requirements and options available to them. ➡ Enhanced key components: Key form components have been redesigned to offer a more intuitive user experience. This includes more dynamic control of the configured parameters, the ability to switch between a UI schema view, and interactive JSON and YAML rendering for full control every time a user launches, relaunches or resumes a pipeline. 👉 Learn more about the refactoring process: https://lnkd.in/dnwtwEhP